Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02715 and MMP_RS02720 are separated by 238 nucleotides MMP_RS02720 and MMP_RS02725 are separated by 10 nucleotides MMP_RS02725 and MMP_RS02730 are separated by 123 nucleotides
MMP_RS02715: MMP_RS02715 - molybdopterin molybdotransferase MoeA, at 518,774 to 519,895
_RS02715
MMP_RS02720: MMP_RS02720 - molybdate ABC transporter substrate-binding protein, at 520,134 to 520,910
_RS02720
MMP_RS02725: MMP_RS02725 - molybdate ABC transporter permease subunit, at 520,921 to 521,586
_RS02725
MMP_RS02730: MMP_RS02730 - ModD protein, at 521,710 to 522,561
_RS02730
Position (kb) 520
521 Strain fitness (log2 ratio) -2
-1
0
1 at 519.386 kb on - strand, within MMP_RS02715 at 519.410 kb on - strand, within MMP_RS02715 at 519.468 kb on + strand, within MMP_RS02715 at 519.468 kb on + strand, within MMP_RS02715 at 519.532 kb on - strand, within MMP_RS02715 at 519.593 kb on - strand, within MMP_RS02715 at 519.593 kb on - strand, within MMP_RS02715 at 519.831 kb on + strand at 519.918 kb on - strand at 519.976 kb on + strand at 520.013 kb on - strand at 520.013 kb on - strand at 520.014 kb on + strand at 520.045 kb on - strand at 520.045 kb on - strand at 520.046 kb on + strand at 520.046 kb on + strand at 520.050 kb on + strand at 520.526 kb on + strand, within MMP_RS02720 at 520.678 kb on + strand, within MMP_RS02720 at 520.711 kb on - strand, within MMP_RS02720 at 520.852 kb on + strand at 520.950 kb on - strand at 520.971 kb on + strand at 521.004 kb on - strand, within MMP_RS02725 at 521.004 kb on - strand, within MMP_RS02725 at 521.063 kb on - strand, within MMP_RS02725 at 521.064 kb on + strand, within MMP_RS02725 at 521.096 kb on - strand, within MMP_RS02725 at 521.105 kb on - strand, within MMP_RS02725 at 521.291 kb on + strand, within MMP_RS02725 at 521.369 kb on - strand, within MMP_RS02725 at 521.377 kb on + strand, within MMP_RS02725 at 521.463 kb on - strand, within MMP_RS02725 at 521.511 kb on + strand, within MMP_RS02725 at 521.524 kb on + strand at 521.546 kb on - strand at 521.546 kb on - strand at 521.547 kb on + strand at 521.548 kb on - strand at 521.548 kb on - strand at 521.548 kb on - strand at 521.548 kb on - strand at 521.548 kb on - strand at 521.549 kb on + strand at 521.549 kb on + strand at 521.549 kb on + strand at 521.553 kb on + strand at 521.572 kb on + strand at 521.621 kb on + strand at 521.621 kb on + strand at 521.621 kb on + strand at 521.623 kb on + strand at 521.635 kb on - strand at 521.635 kb on - strand at 521.636 kb on + strand at 521.636 kb on + strand at 521.636 kb on + strand at 521.672 kb on - strand at 521.675 kb on - strand at 521.676 kb on + strand at 521.680 kb on + strand at 521.709 kb on - strand at 521.710 kb on + strand at 521.710 kb on + strand at 521.719 kb on - strand at 521.719 kb on - strand at 521.825 kb on + strand, within MMP_RS02730 at 521.876 kb on - strand, within MMP_RS02730 at 521.876 kb on - strand, within MMP_RS02730 at 521.877 kb on + strand, within MMP_RS02730
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 519,386 - MMP_RS02715 0.55 -0.2 519,410 - MMP_RS02715 0.57 +0.3 519,468 + MMP_RS02715 0.62 +0.1 519,468 + MMP_RS02715 0.62 +0.5 519,532 - MMP_RS02715 0.68 +0.0 519,593 - MMP_RS02715 0.73 -0.7 519,593 - MMP_RS02715 0.73 +0.1 519,831 + -0.4 519,918 - -0.4 519,976 + -2.3 520,013 - +0.7 520,013 - -0.2 520,014 + +0.0 520,045 - +0.0 520,045 - +0.2 520,046 + +0.1 520,046 + -0.1 520,050 + +0.1 520,526 + MMP_RS02720 0.50 -0.3 520,678 + MMP_RS02720 0.70 -0.2 520,711 - MMP_RS02720 0.74 +0.1 520,852 + -0.1 520,950 - +0.3 520,971 + -0.2 521,004 - MMP_RS02725 0.12 +0.9 521,004 - MMP_RS02725 0.12 -0.1 521,063 - MMP_RS02725 0.21 -0.2 521,064 + MMP_RS02725 0.21 +0.4 521,096 - MMP_RS02725 0.26 +0.6 521,105 - MMP_RS02725 0.28 -0.3 521,291 + MMP_RS02725 0.56 +0.1 521,369 - MMP_RS02725 0.67 +0.2 521,377 + MMP_RS02725 0.68 +0.3 521,463 - MMP_RS02725 0.81 +0.5 521,511 + MMP_RS02725 0.89 -0.2 521,524 + -0.3 521,546 - +0.4 521,546 - +0.1 521,547 + -0.1 521,548 - -0.2 521,548 - +0.2 521,548 - -0.1 521,548 - +0.2 521,548 - -0.6 521,549 + -0.3 521,549 + -0.1 521,549 + +0.1 521,553 + -0.0 521,572 + -0.3 521,621 + +0.2 521,621 + -0.0 521,621 + +0.2 521,623 + +0.4 521,635 - -0.1 521,635 - -0.2 521,636 + +0.0 521,636 + +0.1 521,636 + +0.1 521,672 - +0.0 521,675 - -0.5 521,676 + -0.0 521,680 + +0.2 521,709 - +0.5 521,710 + +0.1 521,710 + +0.2 521,719 - +0.1 521,719 - -0.5 521,825 + MMP_RS02730 0.13 -0.3 521,876 - MMP_RS02730 0.19 -0.2 521,876 - MMP_RS02730 0.19 +0.2 521,877 + MMP_RS02730 0.20 +0.1
Or see this region's nucleotide sequence