Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00630

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00620 and MMP_RS00625 are separated by 89 nucleotidesMMP_RS00625 and MMP_RS00630 are separated by 102 nucleotidesMMP_RS00630 and MMP_RS00635 are separated by 9 nucleotidesMMP_RS00635 and MMP_RS00640 are separated by 140 nucleotides MMP_RS00620: MMP_RS00620 - 4Fe-4S binding protein, at 113,747 to 114,364 _RS00620 MMP_RS00625: MMP_RS00625 - hypothetical protein, at 114,454 to 115,014 _RS00625 MMP_RS00630: MMP_RS00630 - ECF transporter S component, at 115,117 to 115,677 _RS00630 MMP_RS00635: MMP_RS00635 - energy-coupling factor transporter transmembrane protein EcfT, at 115,687 to 116,211 _RS00635 MMP_RS00640: MMP_RS00640 - ABC transporter substrate-binding protein, at 116,352 to 117,383 _RS00640 Position (kb) 115 116Strain fitness (log2 ratio) -1 0 1at 114.122 kb on + strand, within MMP_RS00620at 114.122 kb on + strand, within MMP_RS00620at 114.142 kb on - strand, within MMP_RS00620at 114.229 kb on - strand, within MMP_RS00620at 114.261 kb on - strand, within MMP_RS00620at 114.304 kb on + strandat 114.346 kb on + strandat 114.402 kb on - strandat 114.403 kb on + strandat 114.405 kb on + strandat 114.406 kb on - strandat 114.407 kb on + strandat 114.409 kb on - strandat 114.486 kb on + strandat 114.493 kb on + strandat 114.503 kb on - strandat 114.520 kb on - strand, within MMP_RS00625at 114.525 kb on + strand, within MMP_RS00625at 114.533 kb on - strand, within MMP_RS00625at 114.534 kb on + strand, within MMP_RS00625at 114.535 kb on - strand, within MMP_RS00625at 114.536 kb on + strand, within MMP_RS00625at 114.808 kb on - strand, within MMP_RS00625at 114.880 kb on + strand, within MMP_RS00625at 114.963 kb on + strandat 114.963 kb on + strandat 114.964 kb on - strandat 114.965 kb on + strandat 114.965 kb on + strandat 115.069 kb on + strandat 115.073 kb on + strandat 115.073 kb on + strandat 115.135 kb on - strandat 115.135 kb on - strandat 115.136 kb on + strandat 115.326 kb on - strand, within MMP_RS00630at 115.344 kb on + strand, within MMP_RS00630at 115.615 kb on - strand, within MMP_RS00630at 115.616 kb on + strand, within MMP_RS00630at 115.616 kb on + strand, within MMP_RS00630at 115.618 kb on - strand, within MMP_RS00630at 115.618 kb on - strand, within MMP_RS00630at 115.619 kb on + strand, within MMP_RS00630at 115.676 kb on + strandat 115.851 kb on + strand, within MMP_RS00635at 115.890 kb on - strand, within MMP_RS00635at 115.901 kb on + strand, within MMP_RS00635at 115.916 kb on + strand, within MMP_RS00635at 116.158 kb on - strand, within MMP_RS00635at 116.159 kb on + strandat 116.271 kb on + strandat 116.329 kb on + strandat 116.347 kb on - strandat 116.350 kb on - strandat 116.435 kb on - strandat 116.671 kb on + strand, within MMP_RS00640

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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114,122 + MMP_RS00620 0.61 -1.5
114,122 + MMP_RS00620 0.61 -0.3
114,142 - MMP_RS00620 0.64 -0.5
114,229 - MMP_RS00620 0.78 -0.6
114,261 - MMP_RS00620 0.83 -0.4
114,304 + -0.7
114,346 + +0.6
114,402 - -0.0
114,403 + -0.1
114,405 + -0.0
114,406 - -0.2
114,407 + -0.0
114,409 - +0.3
114,486 + +0.4
114,493 + -0.0
114,503 - +0.1
114,520 - MMP_RS00625 0.12 +0.2
114,525 + MMP_RS00625 0.13 +0.2
114,533 - MMP_RS00625 0.14 -0.1
114,534 + MMP_RS00625 0.14 +0.1
114,535 - MMP_RS00625 0.14 +0.4
114,536 + MMP_RS00625 0.15 -0.4
114,808 - MMP_RS00625 0.63 -0.2
114,880 + MMP_RS00625 0.76 -0.1
114,963 + +0.4
114,963 + +0.4
114,964 - +0.2
114,965 + +0.1
114,965 + +0.0
115,069 + -0.5
115,073 + +0.1
115,073 + -0.6
115,135 - -0.2
115,135 - +0.4
115,136 + -0.0
115,326 - MMP_RS00630 0.37 +0.2
115,344 + MMP_RS00630 0.40 -0.0
115,615 - MMP_RS00630 0.89 +0.2
115,616 + MMP_RS00630 0.89 +0.1
115,616 + MMP_RS00630 0.89 +0.5
115,618 - MMP_RS00630 0.89 +0.3
115,618 - MMP_RS00630 0.89 -0.0
115,619 + MMP_RS00630 0.89 +0.4
115,676 + -0.4
115,851 + MMP_RS00635 0.31 +0.4
115,890 - MMP_RS00635 0.39 +0.2
115,901 + MMP_RS00635 0.41 +0.3
115,916 + MMP_RS00635 0.44 +0.3
116,158 - MMP_RS00635 0.90 -0.4
116,159 + -0.2
116,271 + +0.4
116,329 + +0.5
116,347 - -0.4
116,350 - -1.3
116,435 - +0.0
116,671 + MMP_RS00640 0.31 +0.0

Or see this region's nucleotide sequence