Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS15125

Experiment: D-Trehalose 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose 20 mM
3,339,708	+				-0.4
3,339,756	+				-0.1
3,340,344	-		LRK54_RS15130	0.14	+1.0
3,340,344	-		LRK54_RS15130	0.14	-1.0
3,340,586	+		LRK54_RS15130	0.36	-0.0
3,340,586	+		LRK54_RS15130	0.36	-0.4
3,340,586	+		LRK54_RS15130	0.36	+0.8
3,340,586	+		LRK54_RS15130	0.36	+0.2
3,340,586	+		LRK54_RS15130	0.36	-0.0
3,340,586	+		LRK54_RS15130	0.36	-0.1
3,340,586	+		LRK54_RS15130	0.36	-0.7
3,340,586	+		LRK54_RS15130	0.36	+0.8
3,340,586	+		LRK54_RS15130	0.36	+0.4
3,340,586	+		LRK54_RS15130	0.36	-0.2
3,340,586	+		LRK54_RS15130	0.36	+1.0
3,340,586	+		LRK54_RS15130	0.36	+0.4
3,340,586	+		LRK54_RS15130	0.36	-1.6
3,340,587	-		LRK54_RS15130	0.36	-0.9
3,340,587	-		LRK54_RS15130	0.36	-0.0
3,340,587	-		LRK54_RS15130	0.36	+0.6
3,340,587	-		LRK54_RS15130	0.36	-0.9
3,340,587	-		LRK54_RS15130	0.36	-0.7
3,340,587	-		LRK54_RS15130	0.36	-0.7
3,340,587	-		LRK54_RS15130	0.36	-0.2
3,340,587	-		LRK54_RS15130	0.36	+0.6
3,340,587	-		LRK54_RS15130	0.36	-0.7
3,340,587	-		LRK54_RS15130	0.36	-0.0
3,340,587	-		LRK54_RS15130	0.36	-1.1
3,340,587	-		LRK54_RS15130	0.36	+1.6
3,340,587	-		LRK54_RS15130	0.36	-0.4
3,340,645	+		LRK54_RS15130	0.41	-1.0
3,340,645	+		LRK54_RS15130	0.41	+0.7
3,340,645	+		LRK54_RS15130	0.41	-0.8
3,340,645	+		LRK54_RS15130	0.41	-0.7
3,340,645	+		LRK54_RS15130	0.41	+0.3
3,340,645	+		LRK54_RS15130	0.41	+0.2
3,340,645	+		LRK54_RS15130	0.41	+0.0
3,340,645	+		LRK54_RS15130	0.41	-0.7
3,340,645	+		LRK54_RS15130	0.41	-1.0
3,340,645	+		LRK54_RS15130	0.41	+1.4
3,340,645	+		LRK54_RS15130	0.41	+0.6
3,340,645	+		LRK54_RS15130	0.41	-0.9
3,340,645	+		LRK54_RS15130	0.41	+0.0
3,340,646	-		LRK54_RS15130	0.41	+0.9
3,340,646	-		LRK54_RS15130	0.41	-1.0
3,340,646	-		LRK54_RS15130	0.41	-0.3
3,340,646	-		LRK54_RS15130	0.41	-0.0
3,340,646	-		LRK54_RS15130	0.41	-0.3
3,340,646	-		LRK54_RS15130	0.41	+0.5
3,340,646	-		LRK54_RS15130	0.41	-0.2
3,340,646	-		LRK54_RS15130	0.41	+0.0
3,340,646	-		LRK54_RS15130	0.41	-0.2
3,340,718	+		LRK54_RS15130	0.48	-0.1
3,340,718	+		LRK54_RS15130	0.48	-0.0
3,340,718	+		LRK54_RS15130	0.48	-1.7
3,340,718	+		LRK54_RS15130	0.48	-0.7
3,340,718	+		LRK54_RS15130	0.48	-0.1
3,340,718	+		LRK54_RS15130	0.48	-0.7
3,340,718	+		LRK54_RS15130	0.48	-0.1
3,340,718	+		LRK54_RS15130	0.48	+0.1
3,340,718	+		LRK54_RS15130	0.48	+0.4
3,340,718	+		LRK54_RS15130	0.48	+0.6
3,340,718	+		LRK54_RS15130	0.48	-1.4
3,340,718	+		LRK54_RS15130	0.48	+0.4
3,340,718	+		LRK54_RS15130	0.48	-0.4
3,340,719	-		LRK54_RS15130	0.48	+0.5
3,340,719	-		LRK54_RS15130	0.48	+0.0
3,340,719	-		LRK54_RS15130	0.48	-1.6
3,340,719	-		LRK54_RS15130	0.48	+0.1
3,340,719	-		LRK54_RS15130	0.48	+1.1
3,340,719	-		LRK54_RS15130	0.48	-1.5
3,340,719	-		LRK54_RS15130	0.48	-1.0
3,340,719	-		LRK54_RS15130	0.48	-0.0
3,340,719	-		LRK54_RS15130	0.48	-0.7
3,340,739	+		LRK54_RS15130	0.50	-1.2
3,340,739	+		LRK54_RS15130	0.50	+2.9
3,340,739	+		LRK54_RS15130	0.50	+0.1
3,340,739	+		LRK54_RS15130	0.50	+0.1
3,340,739	+		LRK54_RS15130	0.50	-0.2
3,340,739	+		LRK54_RS15130	0.50	-0.4
3,340,739	+		LRK54_RS15130	0.50	-0.4
3,340,739	+		LRK54_RS15130	0.50	-0.5
3,340,739	+		LRK54_RS15130	0.50	-0.0
3,340,739	+		LRK54_RS15130	0.50	-0.3
3,340,739	+		LRK54_RS15130	0.50	-0.2
3,340,740	-		LRK54_RS15130	0.50	-0.3
3,340,740	-		LRK54_RS15130	0.50	+0.4
3,340,740	-		LRK54_RS15130	0.50	+0.8
3,340,740	-		LRK54_RS15130	0.50	-0.5
3,340,740	-		LRK54_RS15130	0.50	-0.3
3,340,740	-		LRK54_RS15130	0.50	+0.2
3,340,740	-		LRK54_RS15130	0.50	+0.3
3,340,740	-		LRK54_RS15130	0.50	+0.7
3,340,740	-		LRK54_RS15130	0.50	+1.0
3,340,740	-		LRK54_RS15130	0.50	-0.1
3,340,740	-		LRK54_RS15130	0.50	+0.6
3,340,740	-		LRK54_RS15130	0.50	-0.1
3,340,740	-		LRK54_RS15130	0.50	+0.6
3,340,740	-		LRK54_RS15130	0.50	+0.3
3,340,740	-		LRK54_RS15130	0.50	-0.4
3,340,740	-		LRK54_RS15130	0.50	-1.2
3,340,841	+		LRK54_RS15130	0.59	-0.7
3,340,841	+		LRK54_RS15130	0.59	-0.1
3,340,842	-		LRK54_RS15130	0.59	-0.7
3,340,842	-		LRK54_RS15130	0.59	-1.1
3,340,842	-		LRK54_RS15130	0.59	-0.1
3,340,922	+		LRK54_RS15130	0.66	+0.6
3,340,922	+		LRK54_RS15130	0.66	+1.2
3,340,923	-		LRK54_RS15130	0.66	-0.4
3,340,923	-		LRK54_RS15130	0.66	-0.4
3,340,934	-		LRK54_RS15130	0.67	-0.9
3,340,934	-		LRK54_RS15130	0.67	+0.3
3,340,934	-		LRK54_RS15130	0.67	+0.3
3,340,934	-		LRK54_RS15130	0.67	-0.0
3,340,940	+		LRK54_RS15130	0.68	+0.3
3,340,952	+		LRK54_RS15130	0.69	+1.3
3,340,952	+		LRK54_RS15130	0.69	+0.8
3,340,952	+		LRK54_RS15130	0.69	+0.0
3,340,953	-		LRK54_RS15130	0.69	+2.6
3,340,953	-		LRK54_RS15130	0.69	-0.1
3,341,009	+		LRK54_RS15130	0.74	-0.4
3,341,009	+		LRK54_RS15130	0.74	-0.2
3,341,009	+		LRK54_RS15130	0.74	-1.2
3,341,009	+		LRK54_RS15130	0.74	+0.8
3,341,009	+		LRK54_RS15130	0.74	-0.2
3,341,009	+		LRK54_RS15130	0.74	+0.3
3,341,009	+		LRK54_RS15130	0.74	-0.0
3,341,009	+		LRK54_RS15130	0.74	+0.3
3,341,009	+		LRK54_RS15130	0.74	-0.8
3,341,009	+		LRK54_RS15130	0.74	+0.2
3,341,009	+		LRK54_RS15130	0.74	-0.1
3,341,009	+		LRK54_RS15130	0.74	-0.2
3,341,009	+		LRK54_RS15130	0.74	-1.6
3,341,009	+		LRK54_RS15130	0.74	-1.5
3,341,009	+		LRK54_RS15130	0.74	+0.0
3,341,009	+		LRK54_RS15130	0.74	+0.3
3,341,009	+		LRK54_RS15130	0.74	+0.5
3,341,009	+		LRK54_RS15130	0.74	-0.0
3,341,009	+		LRK54_RS15130	0.74	-1.0
3,341,009	+		LRK54_RS15130	0.74	+0.3
3,341,009	+		LRK54_RS15130	0.74	-1.2
3,341,009	+		LRK54_RS15130	0.74	-0.4
3,341,009	+		LRK54_RS15130	0.74	+1.2
3,341,009	+		LRK54_RS15130	0.74	-0.4
3,341,009	+		LRK54_RS15130	0.74	-1.9
3,341,009	+		LRK54_RS15130	0.74	+0.8
3,341,009	+		LRK54_RS15130	0.74	-0.6
3,341,009	+		LRK54_RS15130	0.74	-0.2
3,341,009	+		LRK54_RS15130	0.74	+0.6
3,341,009	+		LRK54_RS15130	0.74	-0.2
3,341,009	+		LRK54_RS15130	0.74	-1.6
3,341,009	+		LRK54_RS15130	0.74	+1.2
3,341,009	+		LRK54_RS15130	0.74	+0.0
3,341,009	+		LRK54_RS15130	0.74	+2.2
3,341,009	+		LRK54_RS15130	0.74	-0.4
3,341,009	+		LRK54_RS15130	0.74	-3.0
3,341,009	+		LRK54_RS15130	0.74	+1.2
3,341,010	-		LRK54_RS15130	0.74	+0.5
3,341,010	-		LRK54_RS15130	0.74	-0.6
3,341,010	-		LRK54_RS15130	0.74	-0.4
3,341,010	-		LRK54_RS15130	0.74	+0.7
3,341,010	-		LRK54_RS15130	0.74	-0.3
3,341,010	-		LRK54_RS15130	0.74	+1.6
3,341,010	-		LRK54_RS15130	0.74	-0.0
3,341,010	-		LRK54_RS15130	0.74	+0.2
3,341,010	-		LRK54_RS15130	0.74	+0.8
3,341,010	-		LRK54_RS15130	0.74	-0.6
3,341,010	-		LRK54_RS15130	0.74	+0.6
3,341,010	-		LRK54_RS15130	0.74	-0.4
3,341,010	-		LRK54_RS15130	0.74	-2.4
3,341,010	-		LRK54_RS15130	0.74	-0.4
3,341,010	-		LRK54_RS15130	0.74	-0.4
3,341,010	-		LRK54_RS15130	0.74	+1.2
3,341,010	-		LRK54_RS15130	0.74	-0.3
3,341,010	-		LRK54_RS15130	0.74	-0.9
3,341,010	-		LRK54_RS15130	0.74	-0.6
3,341,010	-		LRK54_RS15130	0.74	-0.6
3,341,010	-		LRK54_RS15130	0.74	-1.4
3,341,010	-		LRK54_RS15130	0.74	-1.0
3,341,010	-		LRK54_RS15130	0.74	-0.5
3,341,010	-		LRK54_RS15130	0.74	+1.1
3,341,010	-		LRK54_RS15130	0.74	+0.8
3,341,010	-		LRK54_RS15130	0.74	-2.2
3,341,010	-		LRK54_RS15130	0.74	+1.6
3,341,010	-		LRK54_RS15130	0.74	-0.3
3,341,010	-		LRK54_RS15130	0.74	+0.1
3,341,010	-		LRK54_RS15130	0.74	+0.3
3,341,010	-		LRK54_RS15130	0.74	-0.3
3,341,010	-		LRK54_RS15130	0.74	-3.3
3,341,010	-		LRK54_RS15130	0.74	-1.0
3,341,010	-		LRK54_RS15130	0.74	+1.6
3,341,010	-		LRK54_RS15130	0.74	-0.1
3,341,010	-		LRK54_RS15130	0.74	+0.6
3,341,010	-		LRK54_RS15130	0.74	+0.2
3,341,010	-		LRK54_RS15130	0.74	+1.3
3,341,010	-		LRK54_RS15130	0.74	-0.1
3,341,010	-		LRK54_RS15130	0.74	+0.2
3,341,020	+		LRK54_RS15130	0.75	-0.6
3,341,093	+		LRK54_RS15130	0.82	+0.2
3,341,093	+		LRK54_RS15130	0.82	-0.1
3,341,093	+		LRK54_RS15130	0.82	+0.4
3,341,093	+		LRK54_RS15130	0.82	-0.9
3,341,093	+		LRK54_RS15130	0.82	-1.3
3,341,093	+		LRK54_RS15130	0.82	-1.0
3,341,093	+		LRK54_RS15130	0.82	-0.4
3,341,093	+		LRK54_RS15130	0.82	-0.4
3,341,093	+		LRK54_RS15130	0.82	+0.4
3,341,093	+		LRK54_RS15130	0.82	-0.3
3,341,093	+		LRK54_RS15130	0.82	-0.4
3,341,093	+		LRK54_RS15130	0.82	-0.0
3,341,093	+		LRK54_RS15130	0.82	-0.4
3,341,093	+		LRK54_RS15130	0.82	-0.0
3,341,093	+		LRK54_RS15130	0.82	+1.1
3,341,093	+		LRK54_RS15130	0.82	-1.2
3,341,093	+		LRK54_RS15130	0.82	-0.4
3,341,093	+		LRK54_RS15130	0.82	+0.4
3,341,093	+		LRK54_RS15130	0.82	-1.2
3,341,093	+		LRK54_RS15130	0.82	-1.6
3,341,093	+		LRK54_RS15130	0.82	+1.6
3,341,093	+		LRK54_RS15130	0.82	-0.7
3,341,093	+		LRK54_RS15130	0.82	-0.1
3,341,093	+		LRK54_RS15130	0.82	-1.2
3,341,093	+		LRK54_RS15130	0.82	+2.6
3,341,093	+		LRK54_RS15130	0.82	-0.0
3,341,093	+		LRK54_RS15130	0.82	+0.6
3,341,093	+		LRK54_RS15130	0.82	+1.0
3,341,093	+		LRK54_RS15130	0.82	-0.7
3,341,093	+		LRK54_RS15130	0.82	+0.2
3,341,093	+		LRK54_RS15130	0.82	-0.0
3,341,093	+		LRK54_RS15130	0.82	+0.7
3,341,093	+		LRK54_RS15130	0.82	-2.2
3,341,093	+		LRK54_RS15130	0.82	-0.2
3,341,093	+		LRK54_RS15130	0.82	-0.4
3,341,093	+		LRK54_RS15130	0.82	+0.2
3,341,093	+		LRK54_RS15130	0.82	+1.4
3,341,093	+		LRK54_RS15130	0.82	-0.3
3,341,093	+		LRK54_RS15130	0.82	-1.2
3,341,093	+		LRK54_RS15130	0.82	-0.3
3,341,093	+		LRK54_RS15130	0.82	-0.5
3,341,093	+		LRK54_RS15130	0.82	-0.2
3,341,093	+		LRK54_RS15130	0.82	-0.5
3,341,093	+		LRK54_RS15130	0.82	+1.6
3,341,093	+		LRK54_RS15130	0.82	+0.7
3,341,093	+		LRK54_RS15130	0.82	+0.4
3,341,093	+		LRK54_RS15130	0.82	+1.9
3,341,093	+		LRK54_RS15130	0.82	+1.0
3,341,093	+		LRK54_RS15130	0.82	-0.3
3,341,094	-		LRK54_RS15130	0.82	-1.4
3,341,094	-		LRK54_RS15130	0.82	-0.1
3,341,094	-		LRK54_RS15130	0.82	-0.6
3,341,094	-		LRK54_RS15130	0.82	+0.4
3,341,094	-		LRK54_RS15130	0.82	-1.1
3,341,094	-		LRK54_RS15130	0.82	+0.3
3,341,094	-		LRK54_RS15130	0.82	+0.2
3,341,094	-		LRK54_RS15130	0.82	+0.8
3,341,094	-		LRK54_RS15130	0.82	-0.4
3,341,094	-		LRK54_RS15130	0.82	+0.4
3,341,094	-		LRK54_RS15130	0.82	-0.8
3,341,094	-		LRK54_RS15130	0.82	+0.4
3,341,094	-		LRK54_RS15130	0.82	+1.3
3,341,094	-		LRK54_RS15130	0.82	+1.0
3,341,094	-		LRK54_RS15130	0.82	+1.2
3,341,094	-		LRK54_RS15130	0.82	+1.6
3,341,094	-		LRK54_RS15130	0.82	-0.1
3,341,094	-		LRK54_RS15130	0.82	-0.3
3,341,094	-		LRK54_RS15130	0.82	-0.0
3,341,094	-		LRK54_RS15130	0.82	-3.1
3,341,094	-		LRK54_RS15130	0.82	-0.0
3,341,094	-		LRK54_RS15130	0.82	+1.6
3,341,094	-		LRK54_RS15130	0.82	+0.2
3,341,094	-		LRK54_RS15130	0.82	-0.0
3,341,094	-		LRK54_RS15130	0.82	-2.2
3,341,094	-		LRK54_RS15130	0.82	-0.2
3,341,094	-		LRK54_RS15130	0.82	-0.4
3,341,094	-		LRK54_RS15130	0.82	-1.8
3,341,094	-		LRK54_RS15130	0.82	-0.4
3,341,094	-		LRK54_RS15130	0.82	-0.0
3,341,094	-		LRK54_RS15130	0.82	+0.1
3,341,094	-		LRK54_RS15130	0.82	+0.2
3,341,094	-		LRK54_RS15130	0.82	-0.6
3,341,094	-		LRK54_RS15130	0.82	-0.4
3,341,094	-		LRK54_RS15130	0.82	+0.0
3,341,094	-		LRK54_RS15130	0.82	-1.7
3,341,094	-		LRK54_RS15130	0.82	+1.0
3,341,094	-		LRK54_RS15130	0.82	-0.1
3,341,094	-		LRK54_RS15130	0.82	+0.1
3,341,094	-		LRK54_RS15130	0.82	+0.6
3,341,094	-		LRK54_RS15130	0.82	+0.6
3,341,094	-		LRK54_RS15130	0.82	+0.4
3,341,094	-		LRK54_RS15130	0.82	-1.1
3,341,094	-		LRK54_RS15130	0.82	-0.6
3,341,094	-		LRK54_RS15130	0.82	-1.3
3,341,094	-		LRK54_RS15130	0.82	-0.2
3,341,094	-		LRK54_RS15130	0.82	-0.5
3,341,094	-		LRK54_RS15130	0.82	-0.4
3,341,094	-		LRK54_RS15130	0.82	+0.3
3,341,094	-		LRK54_RS15130	0.82	-0.2