Strain Fitness in Pantoea sp. MT58 around IAI47_11880

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,514,278	-		IAI47_11865	0.83	+0.7
2,514,278	-		IAI47_11865	0.83	-0.2
2,514,278	-		IAI47_11865	0.83	+0.4
2,514,278	-		IAI47_11865	0.83	-0.5
2,514,333	+		IAI47_11865	0.88	-1.3
2,514,361	+				+1.3
2,514,362	-				-0.2
2,514,377	+				+2.0
2,514,378	-				+0.5
2,514,394	+				-2.4
2,514,447	+				+0.2
2,514,466	+				+3.0
2,514,467	-				+1.7
2,514,467	-				-0.2
2,514,467	-				+0.0
2,514,467	-				+0.0
2,514,468	+				-1.1
2,514,468	+				-1.6
2,514,468	+				+0.3
2,514,468	+				-1.1
2,514,468	+				+0.3
2,514,468	+				+0.5
2,514,468	+				-1.2
2,514,468	+				-0.8
2,514,468	+				-1.4
2,514,468	+				-0.2
2,514,469	-				+1.5
2,514,469	-				+0.3
2,514,469	-				-1.8
2,514,469	-				-0.8
2,514,469	-				+2.4
2,514,469	-				+0.1
2,514,469	-				-0.3
2,514,469	-				-0.8
2,514,469	-				+1.5
2,514,469	-				+0.5
2,514,528	-		IAI47_11870	0.30	+0.9
2,514,528	-		IAI47_11870	0.30	+1.4
2,514,548	+		IAI47_11870	0.39	-1.5
2,514,555	+		IAI47_11870	0.42	-2.1
2,514,565	+		IAI47_11870	0.47	-1.3
2,514,566	-		IAI47_11870	0.47	+2.1
2,514,566	-		IAI47_11870	0.47	-1.3
2,514,646	+		IAI47_11870	0.85	-0.1
2,514,646	+		IAI47_11870	0.85	+0.1
2,514,647	-		IAI47_11870	0.85	-0.4
2,514,647	-		IAI47_11870	0.85	-2.8
2,514,665	+				-0.8
2,514,666	-				-2.5
2,514,666	-				+0.1
2,514,666	-				-1.5
2,514,666	-				-1.5
2,514,760	+				-1.9
2,514,787	+				-0.6
2,514,817	+				+1.8
2,514,818	-				+0.1
2,514,826	+				+0.1
2,514,849	-				+1.8
2,514,862	+				+0.5
2,514,862	+				+0.8
2,514,862	+				+0.1
2,514,862	+				-1.8
2,514,863	-				+0.7
2,514,863	-				+2.5
2,514,885	+				+0.9
2,514,886	-				+1.8
2,514,886	-				+0.0
2,514,890	+		IAI47_11875	0.10	-1.9
2,514,890	+		IAI47_11875	0.10	+1.9
2,514,976	+		IAI47_11875	0.45	+1.3
2,514,976	+		IAI47_11875	0.45	+0.5
2,514,977	-		IAI47_11875	0.45	-0.9
2,514,994	+		IAI47_11875	0.52	-0.2
2,514,994	+		IAI47_11875	0.52	-0.7
2,514,994	+		IAI47_11875	0.52	+0.2
2,514,994	+		IAI47_11875	0.52	+0.7
2,514,994	+		IAI47_11875	0.52	+0.6
2,514,994	+		IAI47_11875	0.52	-3.4
2,514,994	+		IAI47_11875	0.52	+0.2
2,514,994	+		IAI47_11875	0.52	+0.9
2,514,995	-		IAI47_11875	0.52	-0.1
2,514,995	-		IAI47_11875	0.52	-1.0
2,514,995	-		IAI47_11875	0.52	-1.9
2,514,995	-		IAI47_11875	0.52	+0.6
2,514,995	-		IAI47_11875	0.52	-2.2
2,514,995	-		IAI47_11875	0.52	+1.1
2,514,995	-		IAI47_11875	0.52	+2.5
2,514,995	-		IAI47_11875	0.52	+3.0
2,514,995	-		IAI47_11875	0.52	-1.4
2,514,995	-		IAI47_11875	0.52	-0.4
2,514,995	-		IAI47_11875	0.52	+0.7
2,514,995	-		IAI47_11875	0.52	-1.3
2,514,995	-		IAI47_11875	0.52	+2.0
2,515,020	+		IAI47_11875	0.62	-1.1
2,515,020	+		IAI47_11875	0.62	+0.9
2,515,021	-		IAI47_11875	0.63	-2.8
2,515,041	+		IAI47_11875	0.71	-0.4
2,515,041	+		IAI47_11875	0.71	-1.5
2,515,042	-		IAI47_11875	0.71	-0.3
2,515,042	-		IAI47_11875	0.71	-1.1
2,515,082	+		IAI47_11875	0.87	-0.5
2,515,082	+		IAI47_11875	0.87	+2.7
2,515,082	+		IAI47_11875	0.87	+0.8
2,515,112	-				+0.5
2,515,112	-				+0.1
2,515,112	-				-1.3
2,515,188	+				-0.2
2,515,188	+				+0.0
2,515,189	-				-0.1
2,515,189	-				-0.3
2,515,189	-				-0.1
2,515,189	-				+0.4
2,515,191	-				+0.8
2,515,244	+				+0.0
2,515,245	-				+0.5
2,515,245	-				-0.1
2,515,277	+				+0.5
2,515,319	+		IAI47_11880	0.24	+0.3
2,515,320	-		IAI47_11880	0.25	-0.8
2,515,409	+		IAI47_11880	0.77	-0.6
2,515,446	+				+1.2
2,515,446	+				+1.5
2,515,467	-				+2.2
2,515,493	-				+0.1
2,515,493	-				+2.0
2,515,493	-				+0.4
2,515,493	-				+1.5
2,515,493	-				+0.9
2,515,495	+				-1.4
2,515,495	+				-0.8
2,515,532	-				+0.4
2,515,559	-				+0.6
2,515,559	-				+1.1
2,515,570	-				+0.7
2,515,616	-				+1.2
2,515,698	+				+1.0
2,515,699	-				-2.2
2,515,741	-				-2.1
2,515,761	-				+0.2
2,515,802	+				+0.2
2,515,829	+				+1.7
2,515,830	-				+1.1
2,515,867	+				+0.6
2,515,867	+				-0.7
2,515,867	+				-1.6
2,515,867	+				-2.3
2,515,867	+				+0.7
2,515,868	-				+0.3
2,515,885	+				+3.6
2,515,898	+		IAI47_11885	0.11	-0.1
2,515,898	+		IAI47_11885	0.11	-0.5
2,515,899	-		IAI47_11885	0.11	-0.7
2,515,943	-		IAI47_11885	0.15	+0.1
2,515,943	-		IAI47_11885	0.15	-1.6
2,515,949	-		IAI47_11885	0.16	-1.1
2,515,949	-		IAI47_11885	0.16	+1.9
2,516,006	-		IAI47_11885	0.21	-0.5
2,516,024	+		IAI47_11885	0.23	-0.5
2,516,045	+		IAI47_11885	0.25	-1.9
2,516,045	+		IAI47_11885	0.25	+0.4
2,516,045	+		IAI47_11885	0.25	+2.8
2,516,045	+		IAI47_11885	0.25	-0.8
2,516,045	+		IAI47_11885	0.25	+0.8
2,516,045	+		IAI47_11885	0.25	+1.5
2,516,045	+		IAI47_11885	0.25	+1.5
2,516,046	-		IAI47_11885	0.25	-1.8
2,516,046	-		IAI47_11885	0.25	-0.6
2,516,048	-		IAI47_11885	0.25	+1.2
2,516,048	-		IAI47_11885	0.25	+0.5
2,516,048	-		IAI47_11885	0.25	+0.2
2,516,049	+		IAI47_11885	0.25	+0.1
2,516,049	+		IAI47_11885	0.25	-0.2
2,516,049	+		IAI47_11885	0.25	+0.5
2,516,050	-		IAI47_11885	0.25	+1.1
2,516,124	+		IAI47_11885	0.32	+1.5
2,516,124	+		IAI47_11885	0.32	+1.4
2,516,124	+		IAI47_11885	0.32	-2.2
2,516,125	-		IAI47_11885	0.32	+0.9
2,516,127	+		IAI47_11885	0.32	+0.5
2,516,127	+		IAI47_11885	0.32	+1.5
2,516,127	+		IAI47_11885	0.32	-0.8
2,516,128	-		IAI47_11885	0.32	+0.7
2,516,128	-		IAI47_11885	0.32	-2.3
2,516,128	-		IAI47_11885	0.32	-2.6
2,516,149	+		IAI47_11885	0.34	-0.5
2,516,152	+		IAI47_11885	0.35	+3.0
2,516,152	+		IAI47_11885	0.35	+1.1
2,516,153	-		IAI47_11885	0.35	-1.6
2,516,199	-		IAI47_11885	0.39	-0.2
2,516,199	-		IAI47_11885	0.39	-1.6
2,516,224	+		IAI47_11885	0.41	-0.9
2,516,224	+		IAI47_11885	0.41	-2.2
2,516,225	-		IAI47_11885	0.42	+1.4
2,516,225	-		IAI47_11885	0.42	+1.5
2,516,228	+		IAI47_11885	0.42	+1.0
2,516,228	+		IAI47_11885	0.42	+0.6
2,516,229	-		IAI47_11885	0.42	-2.6
2,516,240	+		IAI47_11885	0.43	-1.6
2,516,240	+		IAI47_11885	0.43	-1.3
2,516,241	-		IAI47_11885	0.43	+0.4
2,516,263	+		IAI47_11885	0.45	+1.0
2,516,263	+		IAI47_11885	0.45	-1.5
2,516,263	+		IAI47_11885	0.45	-1.6
2,516,263	+		IAI47_11885	0.45	-1.9
2,516,263	+		IAI47_11885	0.45	-2.1
2,516,264	-		IAI47_11885	0.45	-1.5
2,516,264	-		IAI47_11885	0.45	+0.2
2,516,275	+		IAI47_11885	0.46	+0.4
2,516,344	+		IAI47_11885	0.53	+1.0
2,516,344	+		IAI47_11885	0.53	+3.8
2,516,345	-		IAI47_11885	0.53	-0.1
2,516,345	-		IAI47_11885	0.53	+0.2
2,516,359	+		IAI47_11885	0.54	+0.5
2,516,359	+		IAI47_11885	0.54	-0.1
2,516,365	+		IAI47_11885	0.55	+0.5
2,516,365	+		IAI47_11885	0.55	-0.2
2,516,365	+		IAI47_11885	0.55	+1.7
2,516,366	-		IAI47_11885	0.55	-0.1
2,516,378	-		IAI47_11885	0.56	-2.3
2,516,407	+		IAI47_11885	0.59	-0.1