Strain Fitness in Pantoea sp. MT58 around IAI47_10415

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,207,719	+				-0.9
2,207,719	+				-0.8
2,207,720	-				-0.4
2,207,863	-		IAI47_10410	0.14	-1.6
2,207,907	+		IAI47_10410	0.19	+0.4
2,207,920	-		IAI47_10410	0.20	-0.6
2,208,002	+		IAI47_10410	0.28	-1.4
2,208,015	+		IAI47_10410	0.30	-0.0
2,208,016	-		IAI47_10410	0.30	-0.2
2,208,016	-		IAI47_10410	0.30	+0.1
2,208,017	+		IAI47_10410	0.30	+1.4
2,208,017	+		IAI47_10410	0.30	+0.5
2,208,017	+		IAI47_10410	0.30	-2.8
2,208,017	+		IAI47_10410	0.30	+0.2
2,208,017	+		IAI47_10410	0.30	+0.7
2,208,017	+		IAI47_10410	0.30	-0.4
2,208,017	+		IAI47_10410	0.30	+0.7
2,208,018	-		IAI47_10410	0.30	-2.5
2,208,018	-		IAI47_10410	0.30	-0.3
2,208,018	-		IAI47_10410	0.30	-0.1
2,208,018	-		IAI47_10410	0.30	+0.6
2,208,066	+		IAI47_10410	0.35	+0.4
2,208,066	+		IAI47_10410	0.35	+2.4
2,208,066	+		IAI47_10410	0.35	+1.9
2,208,066	+		IAI47_10410	0.35	+0.9
2,208,067	-		IAI47_10410	0.35	+1.0
2,208,067	-		IAI47_10410	0.35	-1.6
2,208,067	-		IAI47_10410	0.35	+0.1
2,208,068	+		IAI47_10410	0.35	+0.4
2,208,068	+		IAI47_10410	0.35	+1.4
2,208,068	+		IAI47_10410	0.35	-0.2
2,208,068	+		IAI47_10410	0.35	+0.6
2,208,069	-		IAI47_10410	0.35	+1.0
2,208,069	-		IAI47_10410	0.35	+1.4
2,208,075	+		IAI47_10410	0.36	+0.7
2,208,076	-		IAI47_10410	0.36	+0.1
2,208,076	-		IAI47_10410	0.36	-0.7
2,208,135	+		IAI47_10410	0.42	+1.7
2,208,135	+		IAI47_10410	0.42	+0.5
2,208,136	-		IAI47_10410	0.42	+1.3
2,208,140	+		IAI47_10410	0.42	+1.7
2,208,140	+		IAI47_10410	0.42	-0.4
2,208,140	+		IAI47_10410	0.42	+2.7
2,208,140	+		IAI47_10410	0.42	+2.7
2,208,140	+		IAI47_10410	0.42	-0.6
2,208,141	-		IAI47_10410	0.42	-1.6
2,208,204	+		IAI47_10410	0.49	-0.9
2,208,204	+		IAI47_10410	0.49	+1.9
2,208,204	+		IAI47_10410	0.49	-0.9
2,208,205	-		IAI47_10410	0.49	+1.1
2,208,205	-		IAI47_10410	0.49	-1.6
2,208,270	+		IAI47_10410	0.56	-1.4
2,208,270	+		IAI47_10410	0.56	-2.3
2,208,270	+		IAI47_10410	0.56	-1.4
2,208,270	+		IAI47_10410	0.56	+0.5
2,208,270	+		IAI47_10410	0.56	-0.2
2,208,271	-		IAI47_10410	0.56	+3.4
2,208,271	-		IAI47_10410	0.56	-0.8
2,208,271	-		IAI47_10410	0.56	+1.8
2,208,271	-		IAI47_10410	0.56	-1.0
2,208,271	-		IAI47_10410	0.56	-3.0
2,208,271	-		IAI47_10410	0.56	-0.9
2,208,271	-		IAI47_10410	0.56	-0.2
2,208,272	+		IAI47_10410	0.56	-0.7
2,208,272	+		IAI47_10410	0.56	+2.6
2,208,272	+		IAI47_10410	0.56	-0.9
2,208,273	-		IAI47_10410	0.56	-1.0
2,208,273	-		IAI47_10410	0.56	-0.2
2,208,273	-		IAI47_10410	0.56	+0.6
2,208,288	+		IAI47_10410	0.57	+1.4
2,208,289	-		IAI47_10410	0.57	-1.1
2,208,289	-		IAI47_10410	0.57	-0.0
2,208,314	+		IAI47_10410	0.60	-0.7
2,208,314	+		IAI47_10410	0.60	-1.2
2,208,315	-		IAI47_10410	0.60	-1.7
2,208,352	-		IAI47_10410	0.64	-1.2
2,208,352	-		IAI47_10410	0.64	+1.4
2,208,352	-		IAI47_10410	0.64	+0.8
2,208,352	-		IAI47_10410	0.64	+0.5
2,208,354	+		IAI47_10410	0.64	-1.2
2,208,355	-		IAI47_10410	0.64	+2.3
2,208,355	-		IAI47_10410	0.64	-0.3
2,208,355	-		IAI47_10410	0.64	+1.0
2,208,355	-		IAI47_10410	0.64	+0.5
2,208,355	-		IAI47_10410	0.64	+1.3
2,208,358	-		IAI47_10410	0.64	+0.1
2,208,373	-		IAI47_10410	0.66	-2.4
2,208,495	+		IAI47_10410	0.78	-1.7
2,208,529	-		IAI47_10410	0.82	+0.7
2,208,539	-		IAI47_10410	0.83	-0.7
2,208,598	-		IAI47_10410	0.89	+0.6
2,208,598	-		IAI47_10410	0.89	-1.3
2,208,615	+				-0.9
2,208,615	+				+1.6
2,208,702	+				+2.4
2,208,702	+				-0.2
2,208,703	-				+0.6
2,208,726	+				+1.6
2,208,727	-				+2.4
2,208,727	-				+1.8
2,208,738	-				-1.6
2,208,756	+				-0.7
2,208,757	-				+1.8
2,208,757	-				-2.7
2,208,849	-		IAI47_10415	0.14	-2.9
2,208,881	+		IAI47_10415	0.17	-1.9
2,208,882	-		IAI47_10415	0.17	-0.7
2,208,980	+		IAI47_10415	0.27	-1.3
2,209,034	-		IAI47_10415	0.32	+0.3
2,209,091	+		IAI47_10415	0.38	+0.1
2,209,110	-		IAI47_10415	0.40	+0.5
2,209,275	-		IAI47_10415	0.56	+0.4
2,209,322	+		IAI47_10415	0.61	-1.4
2,209,365	+		IAI47_10415	0.65	-2.7
2,209,365	+		IAI47_10415	0.65	-2.3
2,209,366	-		IAI47_10415	0.65	-1.7
2,209,391	+		IAI47_10415	0.67	-0.6
2,209,392	-		IAI47_10415	0.68	-0.7
2,209,395	-		IAI47_10415	0.68	+0.2
2,209,547	+		IAI47_10415	0.83	-0.6
2,209,602	-		IAI47_10415	0.88	-0.4
2,209,679	+				+1.3
2,209,679	+				+2.6
2,209,680	-				-1.2
2,209,680	-				-0.4
2,209,680	-				+0.5
2,209,706	+				+1.2
2,209,706	+				+0.2
2,209,706	+				+1.6
2,209,707	-				-1.4
2,209,707	-				+1.3
2,209,707	-				-0.9
2,209,707	-				-1.6
2,209,707	-				-1.4
2,209,743	+				+3.6
2,209,744	-				-2.3
2,209,832	+				+2.6
2,209,833	-				-1.4
2,209,911	+		IAI47_10420	0.13	+0.7
2,209,912	-		IAI47_10420	0.13	+0.3
2,210,115	+		IAI47_10420	0.26	-0.6
2,210,158	-		IAI47_10420	0.29	+1.4
2,210,202	+		IAI47_10420	0.32	+1.5
2,210,202	+		IAI47_10420	0.32	-1.0
2,210,202	+		IAI47_10420	0.32	-2.2
2,210,202	+		IAI47_10420	0.32	-0.9
2,210,203	-		IAI47_10420	0.32	-0.3
2,210,257	-		IAI47_10420	0.36	-0.2
2,210,257	-		IAI47_10420	0.36	+1.2
2,210,259	+		IAI47_10420	0.36	-1.4
2,210,259	+		IAI47_10420	0.36	-0.0
2,210,259	+		IAI47_10420	0.36	+0.4
2,210,259	+		IAI47_10420	0.36	+0.4
2,210,259	+		IAI47_10420	0.36	-1.4
2,210,260	-		IAI47_10420	0.36	-0.9
2,210,260	-		IAI47_10420	0.36	+1.1
2,210,260	-		IAI47_10420	0.36	-0.6
2,210,260	-		IAI47_10420	0.36	+1.0
2,210,260	-		IAI47_10420	0.36	-2.4
2,210,271	+		IAI47_10420	0.37	+0.6
2,210,272	-		IAI47_10420	0.37	+0.3
2,210,310	+		IAI47_10420	0.39	-0.2
2,210,397	+		IAI47_10420	0.45	+2.1
2,210,398	-		IAI47_10420	0.45	+1.0
2,210,398	-		IAI47_10420	0.45	+0.6
2,210,483	-		IAI47_10420	0.51	+0.4
2,210,483	-		IAI47_10420	0.51	-0.2
2,210,509	+		IAI47_10420	0.52	-0.3
2,210,509	+		IAI47_10420	0.52	-1.9
2,210,510	-		IAI47_10420	0.52	-2.6
2,210,520	+		IAI47_10420	0.53	+0.2
2,210,520	+		IAI47_10420	0.53	-0.3
2,210,520	+		IAI47_10420	0.53	+0.5
2,210,521	-		IAI47_10420	0.53	-1.4
2,210,521	-		IAI47_10420	0.53	+3.6
2,210,521	-		IAI47_10420	0.53	+0.8
2,210,590	-		IAI47_10420	0.58	+0.9
2,210,609	+		IAI47_10420	0.59	+1.0
2,210,663	-		IAI47_10420	0.62	-1.2
2,210,680	-		IAI47_10420	0.64	-1.0