Strain Fitness in Pantoea sp. MT58 around IAI47_08330

Experiment: Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.0; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,763,624	+				+1.5
1,763,625	-				-2.8
1,763,625	-				-1.4
1,763,650	-				-0.1
1,763,650	-				-1.1
1,763,677	+				-0.5
1,763,677	+				+1.4
1,763,677	+				-1.6
1,763,677	+				+0.9
1,763,677	+				+0.3
1,763,677	+				+1.9
1,763,677	+				+1.5
1,763,677	+				-0.3
1,763,677	+				-0.9
1,763,677	+				+0.5
1,763,677	+				+0.4
1,763,678	-				-1.3
1,763,678	-				-0.2
1,763,682	+				-2.2
1,763,682	+				+0.7
1,763,682	+				-1.1
1,763,682	+				-0.3
1,763,682	+				-0.1
1,763,682	+				-1.3
1,763,682	+				+0.1
1,763,683	-				-0.9
1,763,683	-				-2.9
1,763,683	-				-0.4
1,763,683	-				+0.1
1,763,686	-				-0.3
1,763,686	-				-1.0
1,763,727	-				-0.5
1,763,818	+		IAI47_08325	0.13	+0.2
1,763,818	+		IAI47_08325	0.13	-1.7
1,763,818	+		IAI47_08325	0.13	-1.6
1,763,819	-		IAI47_08325	0.13	-1.9
1,763,819	-		IAI47_08325	0.13	-2.1
1,763,819	-		IAI47_08325	0.13	+0.9
1,763,819	-		IAI47_08325	0.13	-0.1
1,763,819	-		IAI47_08325	0.13	+0.9
1,763,838	-		IAI47_08325	0.15	-1.4
1,763,838	-		IAI47_08325	0.15	-2.1
1,763,866	+		IAI47_08325	0.18	-2.1
1,763,867	-		IAI47_08325	0.18	-1.6
1,763,892	+		IAI47_08325	0.21	-1.9
1,763,920	+		IAI47_08325	0.24	+0.5
1,763,921	-		IAI47_08325	0.25	+0.5
1,763,971	-		IAI47_08325	0.30	-2.9
1,764,048	+		IAI47_08325	0.39	-0.1
1,764,048	+		IAI47_08325	0.39	-2.0
1,764,048	+		IAI47_08325	0.39	+0.3
1,764,048	+		IAI47_08325	0.39	-1.7
1,764,048	+		IAI47_08325	0.39	-1.6
1,764,049	-		IAI47_08325	0.39	-2.2
1,764,078	+		IAI47_08325	0.42	+1.1
1,764,106	+		IAI47_08325	0.46	-2.1
1,764,106	+		IAI47_08325	0.46	-3.4
1,764,107	-		IAI47_08325	0.46	-2.2
1,764,107	-		IAI47_08325	0.46	-1.9
1,764,107	-		IAI47_08325	0.46	-1.1
1,764,184	-		IAI47_08325	0.55	+0.4
1,764,191	+		IAI47_08325	0.55	+0.1
1,764,192	-		IAI47_08325	0.56	-0.1
1,764,298	-		IAI47_08325	0.68	-1.1
1,764,298	-		IAI47_08325	0.68	-0.1
1,764,327	+		IAI47_08325	0.71	-2.3
1,764,327	+		IAI47_08325	0.71	-0.5
1,764,327	+		IAI47_08325	0.71	-1.9
1,764,328	-		IAI47_08325	0.71	-0.5
1,764,337	+		IAI47_08325	0.72	-0.8
1,764,349	-		IAI47_08325	0.74	+1.5
1,764,418	+		IAI47_08325	0.81	+1.5
1,764,418	+		IAI47_08325	0.81	+0.9
1,764,418	+		IAI47_08325	0.81	-0.1
1,764,419	-		IAI47_08325	0.82	-1.6
1,764,470	+		IAI47_08325	0.87	+0.5
1,764,471	-		IAI47_08325	0.88	-0.1
1,764,526	-				-0.1
1,764,557	-				-3.2
1,764,557	-				-2.8
1,764,604	+				+0.6
1,764,604	+				-2.2
1,764,604	+				-1.5
1,764,604	+				-2.3
1,764,604	+				+1.4
1,764,604	+				-2.5
1,764,605	-				-3.5
1,764,605	-				+1.5
1,764,605	-				-0.1
1,764,605	-				+1.5
1,764,605	-				-1.9
1,764,605	-				-0.7
1,764,641	+				+3.6
1,764,664	-				-3.2
1,764,677	+				-0.2
1,764,855	-		IAI47_08330	0.26	+0.8
1,764,934	-		IAI47_08330	0.34	-2.4
1,764,934	-		IAI47_08330	0.34	-0.2
1,764,987	-		IAI47_08330	0.39	-1.7
1,765,040	+		IAI47_08330	0.44	+0.5
1,765,111	+		IAI47_08330	0.51	-0.8
1,765,139	+		IAI47_08330	0.53	-3.3
1,765,148	+		IAI47_08330	0.54	-0.6
1,765,148	+		IAI47_08330	0.54	+1.5
1,765,148	+		IAI47_08330	0.54	-0.0
1,765,148	+		IAI47_08330	0.54	+0.5
1,765,148	+		IAI47_08330	0.54	+1.0
1,765,149	-		IAI47_08330	0.54	-0.5
1,765,163	+		IAI47_08330	0.56	-1.6
1,765,163	+		IAI47_08330	0.56	-1.1
1,765,210	+		IAI47_08330	0.60	+0.7
1,765,235	+		IAI47_08330	0.62	+1.1
1,765,235	+		IAI47_08330	0.62	-3.9
1,765,235	+		IAI47_08330	0.62	-2.0
1,765,235	+		IAI47_08330	0.62	+2.7
1,765,254	+		IAI47_08330	0.64	-2.7
1,765,254	+		IAI47_08330	0.64	+0.2
1,765,254	+		IAI47_08330	0.64	-1.3
1,765,255	-		IAI47_08330	0.64	+1.0
1,765,255	-		IAI47_08330	0.64	+0.0
1,765,255	-		IAI47_08330	0.64	-0.9
1,765,257	-		IAI47_08330	0.65	-0.7
1,765,305	+		IAI47_08330	0.69	-2.6
1,765,305	+		IAI47_08330	0.69	-0.2
1,765,305	+		IAI47_08330	0.69	-0.2
1,765,305	+		IAI47_08330	0.69	+0.9
1,765,305	+		IAI47_08330	0.69	-1.5
1,765,305	+		IAI47_08330	0.69	-1.9
1,765,305	+		IAI47_08330	0.69	+0.8
1,765,305	+		IAI47_08330	0.69	+1.5
1,765,305	+		IAI47_08330	0.69	-2.1
1,765,306	-		IAI47_08330	0.69	-2.4
1,765,306	-		IAI47_08330	0.69	-2.4
1,765,306	-		IAI47_08330	0.69	-2.2
1,765,306	-		IAI47_08330	0.69	-2.3
1,765,306	-		IAI47_08330	0.69	-2.2
1,765,306	-		IAI47_08330	0.69	-0.7
1,765,306	-		IAI47_08330	0.69	-2.6
1,765,306	-		IAI47_08330	0.69	-0.9
1,765,306	-		IAI47_08330	0.69	-0.1
1,765,306	-		IAI47_08330	0.69	-2.9
1,765,306	-		IAI47_08330	0.69	-2.8
1,765,510	+		IAI47_08330	0.89	-1.9
1,765,510	+		IAI47_08330	0.89	-2.9
1,765,511	-		IAI47_08330	0.89	-2.8
1,765,511	-		IAI47_08330	0.89	-1.3
1,765,533	-				-2.7
1,765,561	+				+1.1
1,765,567	+				-3.6
1,765,567	+				-1.9
1,765,567	+				-0.9
1,765,567	+				-0.9
1,765,567	+				+0.5
1,765,567	+				+0.2
1,765,568	-				+2.0
1,765,568	-				-1.9
1,765,568	-				+0.4
1,765,622	+				-0.3
1,765,622	+				+0.8
1,765,622	+				-0.4
1,765,622	+				-2.1
1,765,622	+				-1.3
1,765,623	-				-2.5
1,765,623	-				-1.9
1,765,623	-				-1.1
1,765,627	-				-0.2
1,765,663	+				-1.1
1,765,667	+				-0.4
1,765,667	+				-0.5
1,765,667	+				+0.8
1,765,667	+				-2.3
1,765,667	+				-2.9
1,765,667	+				+0.9
1,765,667	+				-0.5
1,765,667	+				+0.1
1,765,668	-				-1.7
1,765,699	+				-0.7
1,765,699	+				+1.6
1,765,712	+		IAI47_08335	0.11	-3.2
1,765,713	-		IAI47_08335	0.12	-1.5
1,765,765	+		IAI47_08335	0.25	-2.1
1,765,765	+		IAI47_08335	0.25	-0.8
1,765,765	+		IAI47_08335	0.25	-2.3
1,765,765	+		IAI47_08335	0.25	-0.5
1,765,766	-		IAI47_08335	0.25	+1.0
1,765,766	-		IAI47_08335	0.25	-3.3
1,765,766	-		IAI47_08335	0.25	+0.7
1,765,766	-		IAI47_08335	0.25	+0.2
1,765,766	-		IAI47_08335	0.25	+0.7
1,765,904	+		IAI47_08335	0.61	+0.7
1,765,904	+		IAI47_08335	0.61	-1.3
1,765,904	+		IAI47_08335	0.61	-0.9
1,765,904	+		IAI47_08335	0.61	+0.1
1,765,905	-		IAI47_08335	0.61	-3.9
1,765,905	-		IAI47_08335	0.61	-2.2
1,765,983	+		IAI47_08335	0.81	-1.1
1,765,984	-		IAI47_08335	0.81	-1.0
1,765,984	-		IAI47_08335	0.81	+0.3
1,765,984	-		IAI47_08335	0.81	+1.7
1,765,987	+		IAI47_08335	0.82	-2.4
1,765,987	+		IAI47_08335	0.82	-1.2
1,765,988	-		IAI47_08335	0.82	-2.4
1,765,988	-		IAI47_08335	0.82	-0.4
1,765,988	-		IAI47_08335	0.82	+0.1
1,765,988	-		IAI47_08335	0.82	-0.9
1,765,988	-		IAI47_08335	0.82	-0.5
1,765,988	-		IAI47_08335	0.82	-0.1
1,766,055	+				-0.3
1,766,055	+				+0.5
1,766,055	+				-1.3
1,766,055	+				+0.4
1,766,055	+				+1.0
1,766,055	+				+1.9
1,766,056	-				-2.3
1,766,056	-				-2.1
1,766,056	-				-1.2
1,766,056	-				-0.1
1,766,056	-				+0.7
1,766,056	-				-3.2
1,766,056	-				+0.3
1,766,056	-				-2.1
1,766,123	+				-2.0
1,766,123	+				+0.0
1,766,123	+				+1.1
1,766,123	+				-2.5
1,766,232	+		IAI47_08340	0.26	+1.4
1,766,232	+		IAI47_08340	0.26	+0.2
1,766,232	+		IAI47_08340	0.26	-2.6
1,766,232	+		IAI47_08340	0.26	-0.3
1,766,232	+		IAI47_08340	0.26	+0.2
1,766,232	+		IAI47_08340	0.26	-2.0
1,766,233	-		IAI47_08340	0.26	-1.0
1,766,233	-		IAI47_08340	0.26	+2.3
1,766,233	-		IAI47_08340	0.26	-0.2
1,766,233	-		IAI47_08340	0.26	-3.6
1,766,233	-		IAI47_08340	0.26	-1.1
1,766,233	-		IAI47_08340	0.26	+0.1
1,766,233	-		IAI47_08340	0.26	-3.0
1,766,516	+		IAI47_08340	0.70	+0.8
1,766,516	+		IAI47_08340	0.70	-3.1
1,766,516	+		IAI47_08340	0.70	-0.4
1,766,516	+		IAI47_08340	0.70	-2.1
1,766,516	+		IAI47_08340	0.70	-1.7
1,766,516	+		IAI47_08340	0.70	-1.5
1,766,516	+		IAI47_08340	0.70	-0.5
1,766,517	-		IAI47_08340	0.70	-0.1
1,766,517	-		IAI47_08340	0.70	+1.9
1,766,517	-		IAI47_08340	0.70	+1.0
1,766,517	-		IAI47_08340	0.70	-1.5
1,766,517	-		IAI47_08340	0.70	+1.5