Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2413

Experiment: LB 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2412 and Ga0059261_2413 are separated by 79 nucleotidesGa0059261_2413 and Ga0059261_2414 are separated by 4 nucleotidesGa0059261_2414 and Ga0059261_2415 are separated by 51 nucleotides Ga0059261_2412: Ga0059261_2412 - ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components, at 2,506,019 to 2,507,827 _2412 Ga0059261_2413: Ga0059261_2413 - hypothetical protein, at 2,507,907 to 2,508,137 _2413 Ga0059261_2414: Ga0059261_2414 - hypothetical protein, at 2,508,142 to 2,508,336 _2414 Ga0059261_2415: Ga0059261_2415 - Phytoene/squalene synthetase, at 2,508,388 to 2,509,329 _2415 Position (kb) 2507 2508 2509Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2507.076 kb on + strand, within Ga0059261_2412at 2507.076 kb on + strand, within Ga0059261_2412at 2507.076 kb on + strand, within Ga0059261_2412at 2507.076 kb on + strand, within Ga0059261_2412at 2507.077 kb on - strand, within Ga0059261_2412at 2507.077 kb on - strand, within Ga0059261_2412at 2507.097 kb on + strand, within Ga0059261_2412at 2507.098 kb on - strand, within Ga0059261_2412at 2507.098 kb on - strand, within Ga0059261_2412at 2507.098 kb on - strand, within Ga0059261_2412at 2507.130 kb on + strand, within Ga0059261_2412at 2507.130 kb on + strand, within Ga0059261_2412at 2507.131 kb on - strand, within Ga0059261_2412at 2507.253 kb on + strand, within Ga0059261_2412at 2507.253 kb on + strand, within Ga0059261_2412at 2507.253 kb on + strand, within Ga0059261_2412at 2507.253 kb on + strand, within Ga0059261_2412at 2507.253 kb on + strand, within Ga0059261_2412at 2507.253 kb on + strand, within Ga0059261_2412at 2507.253 kb on + strand, within Ga0059261_2412at 2507.253 kb on + strand, within Ga0059261_2412at 2507.253 kb on + strand, within Ga0059261_2412at 2507.253 kb on + strand, within Ga0059261_2412at 2507.253 kb on + strand, within Ga0059261_2412at 2507.253 kb on + strand, within Ga0059261_2412at 2507.253 kb on + strand, within Ga0059261_2412at 2507.254 kb on - strandat 2507.254 kb on - strand, within Ga0059261_2412at 2507.254 kb on - strand, within Ga0059261_2412at 2507.254 kb on - strand, within Ga0059261_2412at 2507.254 kb on - strand, within Ga0059261_2412at 2507.254 kb on - strand, within Ga0059261_2412at 2507.254 kb on - strand, within Ga0059261_2412at 2507.370 kb on + strand, within Ga0059261_2412at 2507.370 kb on + strand, within Ga0059261_2412at 2507.370 kb on + strand, within Ga0059261_2412at 2507.370 kb on + strand, within Ga0059261_2412at 2507.370 kb on + strand, within Ga0059261_2412at 2507.370 kb on + strand, within Ga0059261_2412at 2507.370 kb on + strand, within Ga0059261_2412at 2507.370 kb on + strand, within Ga0059261_2412at 2507.370 kb on + strand, within Ga0059261_2412at 2507.370 kb on + strand, within Ga0059261_2412at 2507.370 kb on + strand, within Ga0059261_2412at 2507.371 kb on - strand, within Ga0059261_2412at 2507.371 kb on - strand, within Ga0059261_2412at 2507.371 kb on - strand, within Ga0059261_2412at 2507.371 kb on - strand, within Ga0059261_2412at 2507.371 kb on - strand, within Ga0059261_2412at 2507.544 kb on + strand, within Ga0059261_2412at 2507.577 kb on + strand, within Ga0059261_2412at 2507.632 kb on + strand, within Ga0059261_2412at 2507.632 kb on + strand, within Ga0059261_2412at 2507.633 kb on - strand, within Ga0059261_2412at 2507.658 kb on + strandat 2507.658 kb on + strandat 2507.659 kb on - strandat 2507.670 kb on + strandat 2507.670 kb on + strandat 2507.671 kb on - strandat 2507.671 kb on - strandat 2507.671 kb on - strandat 2507.671 kb on - strandat 2507.757 kb on + strandat 2507.758 kb on - strandat 2507.758 kb on - strandat 2507.758 kb on - strandat 2507.922 kb on + strandat 2507.922 kb on + strandat 2507.923 kb on - strandat 2507.923 kb on - strandat 2507.995 kb on - strand, within Ga0059261_2413at 2508.135 kb on + strandat 2508.135 kb on + strandat 2508.135 kb on + strandat 2508.135 kb on + strandat 2508.136 kb on - strandat 2508.136 kb on - strandat 2508.136 kb on - strandat 2508.136 kb on - strandat 2508.136 kb on - strandat 2508.136 kb on - strandat 2508.136 kb on - strandat 2508.136 kb on - strandat 2508.140 kb on + strandat 2508.140 kb on + strandat 2508.140 kb on + strandat 2508.140 kb on + strandat 2508.141 kb on - strandat 2508.141 kb on - strandat 2508.141 kb on - strandat 2508.141 kb on - strandat 2508.143 kb on + strandat 2508.143 kb on + strandat 2508.144 kb on - strandat 2508.144 kb on - strandat 2508.325 kb on + strandat 2508.336 kb on + strandat 2508.336 kb on + strandat 2508.337 kb on - strandat 2508.337 kb on - strandat 2508.349 kb on + strandat 2508.349 kb on + strandat 2508.350 kb on - strandat 2508.350 kb on - strandat 2508.350 kb on - strandat 2508.389 kb on + strandat 2508.434 kb on + strandat 2508.434 kb on + strandat 2508.434 kb on + strandat 2508.435 kb on - strandat 2508.566 kb on + strand, within Ga0059261_2415at 2508.566 kb on + strand, within Ga0059261_2415at 2508.567 kb on - strand, within Ga0059261_2415at 2508.567 kb on - strand, within Ga0059261_2415at 2508.567 kb on - strand, within Ga0059261_2415at 2508.567 kb on - strand, within Ga0059261_2415at 2508.567 kb on - strand, within Ga0059261_2415at 2508.567 kb on - strand, within Ga0059261_2415at 2508.567 kb on - strand, within Ga0059261_2415at 2508.567 kb on - strand, within Ga0059261_2415at 2508.567 kb on - strand, within Ga0059261_2415at 2508.644 kb on + strand, within Ga0059261_2415at 2508.644 kb on + strand, within Ga0059261_2415at 2508.711 kb on + strand, within Ga0059261_2415at 2508.711 kb on + strand, within Ga0059261_2415at 2508.711 kb on + strand, within Ga0059261_2415at 2508.711 kb on + strand, within Ga0059261_2415at 2508.711 kb on + strand, within Ga0059261_2415at 2508.711 kb on + strand, within Ga0059261_2415at 2508.712 kb on - strand, within Ga0059261_2415at 2508.712 kb on - strand, within Ga0059261_2415at 2508.712 kb on - strand, within Ga0059261_2415at 2508.712 kb on - strand, within Ga0059261_2415at 2508.712 kb on - strand, within Ga0059261_2415at 2508.712 kb on - strand, within Ga0059261_2415at 2508.712 kb on - strand, within Ga0059261_2415at 2508.729 kb on + strand, within Ga0059261_2415at 2508.730 kb on - strand, within Ga0059261_2415at 2508.761 kb on + strand, within Ga0059261_2415at 2508.762 kb on - strand, within Ga0059261_2415at 2508.762 kb on - strand, within Ga0059261_2415at 2508.762 kb on - strand, within Ga0059261_2415at 2508.762 kb on - strand, within Ga0059261_2415at 2508.762 kb on - strand, within Ga0059261_2415at 2508.762 kb on - strand, within Ga0059261_2415at 2508.762 kb on - strand, within Ga0059261_2415at 2508.762 kb on - strand, within Ga0059261_2415at 2508.805 kb on - strand, within Ga0059261_2415at 2508.920 kb on + strand, within Ga0059261_2415at 2508.920 kb on + strand, within Ga0059261_2415at 2508.920 kb on + strand, within Ga0059261_2415at 2508.920 kb on + strand, within Ga0059261_2415at 2508.920 kb on + strand, within Ga0059261_2415at 2508.921 kb on - strand, within Ga0059261_2415at 2508.921 kb on - strand, within Ga0059261_2415at 2508.921 kb on - strand, within Ga0059261_2415at 2508.921 kb on - strand, within Ga0059261_2415at 2508.921 kb on - strand, within Ga0059261_2415at 2508.921 kb on - strand, within Ga0059261_2415at 2508.926 kb on + strand, within Ga0059261_2415at 2508.927 kb on - strand, within Ga0059261_2415at 2508.927 kb on - strand, within Ga0059261_2415

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 20C
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2,507,076 + Ga0059261_2412 0.58 +1.0
2,507,076 + Ga0059261_2412 0.58 +0.3
2,507,076 + Ga0059261_2412 0.58 -0.0
2,507,076 + Ga0059261_2412 0.58 +0.9
2,507,077 - Ga0059261_2412 0.58 +1.2
2,507,077 - Ga0059261_2412 0.58 -0.3
2,507,097 + Ga0059261_2412 0.60 -0.2
2,507,098 - Ga0059261_2412 0.60 +0.1
2,507,098 - Ga0059261_2412 0.60 +1.3
2,507,098 - Ga0059261_2412 0.60 -0.5
2,507,130 + Ga0059261_2412 0.61 +1.7
2,507,130 + Ga0059261_2412 0.61 +1.5
2,507,131 - Ga0059261_2412 0.61 +0.7
2,507,253 + Ga0059261_2412 0.68 +0.6
2,507,253 + Ga0059261_2412 0.68 -0.4
2,507,253 + Ga0059261_2412 0.68 +0.5
2,507,253 + Ga0059261_2412 0.68 -0.9
2,507,253 + Ga0059261_2412 0.68 +0.7
2,507,253 + Ga0059261_2412 0.68 +1.0
2,507,253 + Ga0059261_2412 0.68 +0.1
2,507,253 + Ga0059261_2412 0.68 -0.1
2,507,253 + Ga0059261_2412 0.68 +0.5
2,507,253 + Ga0059261_2412 0.68 +0.3
2,507,253 + Ga0059261_2412 0.68 +0.2
2,507,253 + Ga0059261_2412 0.68 -0.7
2,507,253 + Ga0059261_2412 0.68 -0.8
2,507,254 - +1.7
2,507,254 - Ga0059261_2412 0.68 -0.0
2,507,254 - Ga0059261_2412 0.68 +0.1
2,507,254 - Ga0059261_2412 0.68 +0.6
2,507,254 - Ga0059261_2412 0.68 +1.1
2,507,254 - Ga0059261_2412 0.68 +0.1
2,507,254 - Ga0059261_2412 0.68 +1.1
2,507,370 + Ga0059261_2412 0.75 -0.1
2,507,370 + Ga0059261_2412 0.75 -1.0
2,507,370 + Ga0059261_2412 0.75 +0.6
2,507,370 + Ga0059261_2412 0.75 +0.3
2,507,370 + Ga0059261_2412 0.75 +0.6
2,507,370 + Ga0059261_2412 0.75 +0.7
2,507,370 + Ga0059261_2412 0.75 +0.4
2,507,370 + Ga0059261_2412 0.75 -0.0
2,507,370 + Ga0059261_2412 0.75 -0.3
2,507,370 + Ga0059261_2412 0.75 +0.9
2,507,370 + Ga0059261_2412 0.75 +1.0
2,507,371 - Ga0059261_2412 0.75 +0.1
2,507,371 - Ga0059261_2412 0.75 +2.7
2,507,371 - Ga0059261_2412 0.75 +1.1
2,507,371 - Ga0059261_2412 0.75 +0.0
2,507,371 - Ga0059261_2412 0.75 +0.7
2,507,544 + Ga0059261_2412 0.84 +0.8
2,507,577 + Ga0059261_2412 0.86 +2.3
2,507,632 + Ga0059261_2412 0.89 -0.3
2,507,632 + Ga0059261_2412 0.89 +0.2
2,507,633 - Ga0059261_2412 0.89 +0.1
2,507,658 + +0.1
2,507,658 + +0.6
2,507,659 - +0.3
2,507,670 + -1.0
2,507,670 + +0.1
2,507,671 - +0.8
2,507,671 - -0.3
2,507,671 - +0.6
2,507,671 - -1.1
2,507,757 + +0.6
2,507,758 - +1.3
2,507,758 - -0.3
2,507,758 - -0.1
2,507,922 + +0.7
2,507,922 + -0.6
2,507,923 - -0.4
2,507,923 - +0.3
2,507,995 - Ga0059261_2413 0.38 -0.6
2,508,135 + -0.3
2,508,135 + -0.1
2,508,135 + +0.0
2,508,135 + +0.4
2,508,136 - +1.2
2,508,136 - -0.6
2,508,136 - -0.2
2,508,136 - -0.4
2,508,136 - -0.1
2,508,136 - +0.0
2,508,136 - -0.5
2,508,136 - +0.8
2,508,140 + -0.2
2,508,140 + -0.9
2,508,140 + +0.3
2,508,140 + +0.7
2,508,141 - -0.5
2,508,141 - +0.2
2,508,141 - +0.1
2,508,141 - +2.3
2,508,143 + +0.1
2,508,143 + -0.3
2,508,144 - +0.5
2,508,144 - +0.6
2,508,325 + -0.2
2,508,336 + +0.3
2,508,336 + +0.5
2,508,337 - +0.2
2,508,337 - -0.6
2,508,349 + +0.2
2,508,349 + +0.1
2,508,350 - -0.3
2,508,350 - -0.0
2,508,350 - -0.5
2,508,389 + -0.1
2,508,434 + +0.3
2,508,434 + -1.2
2,508,434 + -0.3
2,508,435 - -0.9
2,508,566 + Ga0059261_2415 0.19 +0.7
2,508,566 + Ga0059261_2415 0.19 -1.1
2,508,567 - Ga0059261_2415 0.19 -0.5
2,508,567 - Ga0059261_2415 0.19 -0.2
2,508,567 - Ga0059261_2415 0.19 -0.5
2,508,567 - Ga0059261_2415 0.19 -0.1
2,508,567 - Ga0059261_2415 0.19 -1.0
2,508,567 - Ga0059261_2415 0.19 -0.7
2,508,567 - Ga0059261_2415 0.19 -0.9
2,508,567 - Ga0059261_2415 0.19 -2.0
2,508,567 - Ga0059261_2415 0.19 -0.7
2,508,644 + Ga0059261_2415 0.27 -1.5
2,508,644 + Ga0059261_2415 0.27 -1.0
2,508,711 + Ga0059261_2415 0.34 -0.2
2,508,711 + Ga0059261_2415 0.34 -0.5
2,508,711 + Ga0059261_2415 0.34 -0.3
2,508,711 + Ga0059261_2415 0.34 -1.6
2,508,711 + Ga0059261_2415 0.34 -0.3
2,508,711 + Ga0059261_2415 0.34 +0.1
2,508,712 - Ga0059261_2415 0.34 -2.4
2,508,712 - Ga0059261_2415 0.34 -2.1
2,508,712 - Ga0059261_2415 0.34 -0.3
2,508,712 - Ga0059261_2415 0.34 +1.7
2,508,712 - Ga0059261_2415 0.34 -1.5
2,508,712 - Ga0059261_2415 0.34 -1.5
2,508,712 - Ga0059261_2415 0.34 -0.0
2,508,729 + Ga0059261_2415 0.36 +0.0
2,508,730 - Ga0059261_2415 0.36 -0.8
2,508,761 + Ga0059261_2415 0.40 -0.7
2,508,762 - Ga0059261_2415 0.40 -0.8
2,508,762 - Ga0059261_2415 0.40 +0.3
2,508,762 - Ga0059261_2415 0.40 -0.4
2,508,762 - Ga0059261_2415 0.40 -1.1
2,508,762 - Ga0059261_2415 0.40 +0.1
2,508,762 - Ga0059261_2415 0.40 -0.4
2,508,762 - Ga0059261_2415 0.40 +0.4
2,508,762 - Ga0059261_2415 0.40 -0.9
2,508,805 - Ga0059261_2415 0.44 +0.1
2,508,920 + Ga0059261_2415 0.56 +0.5
2,508,920 + Ga0059261_2415 0.56 +0.7
2,508,920 + Ga0059261_2415 0.56 -2.2
2,508,920 + Ga0059261_2415 0.56 -0.5
2,508,920 + Ga0059261_2415 0.56 +0.6
2,508,921 - Ga0059261_2415 0.57 -3.1
2,508,921 - Ga0059261_2415 0.57 +0.7
2,508,921 - Ga0059261_2415 0.57 +0.5
2,508,921 - Ga0059261_2415 0.57 -0.7
2,508,921 - Ga0059261_2415 0.57 -0.6
2,508,921 - Ga0059261_2415 0.57 -0.5
2,508,926 + Ga0059261_2415 0.57 -1.0
2,508,927 - Ga0059261_2415 0.57 -1.0
2,508,927 - Ga0059261_2415 0.57 -0.0

Or see this region's nucleotide sequence