Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0672

Experiment: LB 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0670 and Ga0059261_0671 are separated by 356 nucleotidesGa0059261_0671 and Ga0059261_0672 are separated by 48 nucleotidesGa0059261_0672 and Ga0059261_0673 overlap by 8 nucleotides Ga0059261_0670: Ga0059261_0670 - hypothetical protein, at 707,332 to 708,441 _0670 Ga0059261_0671: Ga0059261_0671 - Uncharacterized conserved protein, at 708,798 to 709,031 _0671 Ga0059261_0672: Ga0059261_0672 - Domain of unknown function (DUF955), at 709,080 to 709,670 _0672 Ga0059261_0673: Ga0059261_0673 - hypothetical protein, at 709,663 to 710,769 _0673 Position (kb) 709 710Strain fitness (log2 ratio) -2 -1 0 1at 708.251 kb on + strand, within Ga0059261_0670at 708.251 kb on + strand, within Ga0059261_0670at 708.270 kb on + strand, within Ga0059261_0670at 708.270 kb on + strand, within Ga0059261_0670at 708.270 kb on + strand, within Ga0059261_0670at 708.271 kb on - strand, within Ga0059261_0670at 708.271 kb on - strand, within Ga0059261_0670at 708.271 kb on - strand, within Ga0059261_0670at 708.271 kb on - strand, within Ga0059261_0670at 708.360 kb on - strandat 708.475 kb on + strandat 708.475 kb on + strandat 708.476 kb on - strandat 708.476 kb on - strandat 708.479 kb on + strandat 708.479 kb on + strandat 708.479 kb on + strandat 708.479 kb on + strandat 708.942 kb on + strand, within Ga0059261_0671at 708.942 kb on + strand, within Ga0059261_0671at 708.943 kb on - strand, within Ga0059261_0671at 708.943 kb on - strand, within Ga0059261_0671at 708.948 kb on + strand, within Ga0059261_0671at 708.949 kb on - strand, within Ga0059261_0671at 708.949 kb on - strand, within Ga0059261_0671at 708.949 kb on - strandat 708.984 kb on + strand, within Ga0059261_0671at 709.103 kb on - strandat 709.104 kb on + strandat 709.104 kb on + strandat 709.105 kb on - strandat 709.105 kb on - strandat 709.105 kb on - strandat 709.140 kb on + strand, within Ga0059261_0672at 709.140 kb on + strand, within Ga0059261_0672at 709.140 kb on + strand, within Ga0059261_0672at 709.140 kb on + strand, within Ga0059261_0672at 709.140 kb on + strand, within Ga0059261_0672at 709.140 kb on + strand, within Ga0059261_0672at 709.140 kb on + strand, within Ga0059261_0672at 709.140 kb on + strand, within Ga0059261_0672at 709.141 kb on - strand, within Ga0059261_0672at 709.141 kb on - strand, within Ga0059261_0672at 709.141 kb on - strand, within Ga0059261_0672at 709.141 kb on - strand, within Ga0059261_0672at 709.141 kb on - strand, within Ga0059261_0672at 709.141 kb on - strand, within Ga0059261_0672at 709.141 kb on - strand, within Ga0059261_0672at 709.141 kb on - strand, within Ga0059261_0672at 709.165 kb on + strand, within Ga0059261_0672at 709.166 kb on - strand, within Ga0059261_0672at 709.166 kb on - strand, within Ga0059261_0672at 709.166 kb on - strand, within Ga0059261_0672at 709.247 kb on - strand, within Ga0059261_0672at 709.291 kb on + strand, within Ga0059261_0672at 709.292 kb on - strand, within Ga0059261_0672at 709.320 kb on + strand, within Ga0059261_0672at 709.320 kb on + strand, within Ga0059261_0672at 709.321 kb on - strand, within Ga0059261_0672at 709.649 kb on - strandat 709.719 kb on + strandat 709.724 kb on + strandat 709.724 kb on + strandat 709.765 kb on - strandat 709.765 kb on - strandat 709.901 kb on - strand, within Ga0059261_0673at 709.947 kb on - strand, within Ga0059261_0673at 710.060 kb on + strand, within Ga0059261_0673at 710.060 kb on + strand, within Ga0059261_0673at 710.109 kb on - strand, within Ga0059261_0673at 710.193 kb on + strand, within Ga0059261_0673at 710.231 kb on + strand, within Ga0059261_0673at 710.312 kb on - strand, within Ga0059261_0673at 710.317 kb on - strand, within Ga0059261_0673at 710.617 kb on + strand, within Ga0059261_0673at 710.618 kb on - strand, within Ga0059261_0673at 710.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 20C
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708,251 + Ga0059261_0670 0.83 -0.3
708,251 + Ga0059261_0670 0.83 -0.3
708,270 + Ga0059261_0670 0.85 +0.1
708,270 + Ga0059261_0670 0.85 -0.3
708,270 + Ga0059261_0670 0.85 +0.6
708,271 - Ga0059261_0670 0.85 +1.2
708,271 - Ga0059261_0670 0.85 -0.3
708,271 - Ga0059261_0670 0.85 -0.0
708,271 - Ga0059261_0670 0.85 -1.7
708,360 - +1.0
708,475 + -1.3
708,475 + -0.7
708,476 - +0.3
708,476 - -0.6
708,479 + -0.3
708,479 + -0.0
708,479 + -0.2
708,479 + +1.4
708,942 + Ga0059261_0671 0.62 +0.6
708,942 + Ga0059261_0671 0.62 +0.6
708,943 - Ga0059261_0671 0.62 +1.0
708,943 - Ga0059261_0671 0.62 -0.0
708,948 + Ga0059261_0671 0.64 -0.3
708,949 - Ga0059261_0671 0.65 +0.4
708,949 - Ga0059261_0671 0.65 +0.4
708,949 - -0.1
708,984 + Ga0059261_0671 0.79 -0.1
709,103 - -0.2
709,104 + -1.4
709,104 + -0.1
709,105 - +0.0
709,105 - -0.5
709,105 - +0.0
709,140 + Ga0059261_0672 0.10 +0.4
709,140 + Ga0059261_0672 0.10 -0.4
709,140 + Ga0059261_0672 0.10 +1.1
709,140 + Ga0059261_0672 0.10 +1.1
709,140 + Ga0059261_0672 0.10 -0.1
709,140 + Ga0059261_0672 0.10 -0.3
709,140 + Ga0059261_0672 0.10 +0.6
709,140 + Ga0059261_0672 0.10 -0.6
709,141 - Ga0059261_0672 0.10 +0.2
709,141 - Ga0059261_0672 0.10 +0.7
709,141 - Ga0059261_0672 0.10 +0.2
709,141 - Ga0059261_0672 0.10 +0.4
709,141 - Ga0059261_0672 0.10 +0.9
709,141 - Ga0059261_0672 0.10 -0.5
709,141 - Ga0059261_0672 0.10 -0.1
709,141 - Ga0059261_0672 0.10 -0.3
709,165 + Ga0059261_0672 0.14 +0.3
709,166 - Ga0059261_0672 0.15 +0.1
709,166 - Ga0059261_0672 0.15 +1.1
709,166 - Ga0059261_0672 0.15 -0.6
709,247 - Ga0059261_0672 0.28 -0.6
709,291 + Ga0059261_0672 0.36 +0.6
709,292 - Ga0059261_0672 0.36 +0.3
709,320 + Ga0059261_0672 0.41 +0.8
709,320 + Ga0059261_0672 0.41 -0.2
709,321 - Ga0059261_0672 0.41 +0.5
709,649 - +0.9
709,719 + +0.4
709,724 + -0.9
709,724 + +0.7
709,765 - +0.3
709,765 - -1.9
709,901 - Ga0059261_0673 0.21 -1.0
709,947 - Ga0059261_0673 0.26 -0.1
710,060 + Ga0059261_0673 0.36 +0.1
710,060 + Ga0059261_0673 0.36 +0.3
710,109 - Ga0059261_0673 0.40 -0.3
710,193 + Ga0059261_0673 0.48 -0.1
710,231 + Ga0059261_0673 0.51 +0.7
710,312 - Ga0059261_0673 0.59 -1.3
710,317 - Ga0059261_0673 0.59 -0.2
710,617 + Ga0059261_0673 0.86 +0.6
710,618 - Ga0059261_0673 0.86 +1.2
710,663 - -0.1

Or see this region's nucleotide sequence