Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19205

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19195 and CSW01_19200 are separated by 114 nucleotidesCSW01_19200 and CSW01_19205 are separated by 209 nucleotidesCSW01_19205 and CSW01_19210 are separated by 126 nucleotidesCSW01_19210 and CSW01_19215 are separated by 364 nucleotides CSW01_19195: CSW01_19195 - LysR family transcriptional regulator, at 966,408 to 967,328 _19195 CSW01_19200: CSW01_19200 - hypothetical protein, at 967,443 to 967,802 _19200 CSW01_19205: CSW01_19205 - flavohemoglobin expression-modulating QEGLA motif protein, at 968,012 to 969,872 _19205 CSW01_19210: CSW01_19210 - DUF3081 domain-containing protein, at 969,999 to 970,250 _19210 CSW01_19215: CSW01_19215 - glucosamine-6-phosphate deaminase, at 970,615 to 971,415 _19215 Position (kb) 968 969 970Strain fitness (log2 ratio) -2 -1 0 1 2at 967.015 kb on - strand, within CSW01_19195at 967.036 kb on - strand, within CSW01_19195at 967.073 kb on - strand, within CSW01_19195at 967.078 kb on + strand, within CSW01_19195at 967.078 kb on + strand, within CSW01_19195at 967.078 kb on + strand, within CSW01_19195at 967.117 kb on - strand, within CSW01_19195at 967.147 kb on + strand, within CSW01_19195at 967.249 kb on + strandat 967.259 kb on + strandat 967.300 kb on + strandat 967.406 kb on + strandat 967.443 kb on - strandat 967.453 kb on - strandat 967.453 kb on - strandat 967.760 kb on + strand, within CSW01_19200at 967.768 kb on - strandat 967.796 kb on + strandat 967.804 kb on - strandat 968.110 kb on - strandat 968.110 kb on - strandat 968.140 kb on - strandat 968.172 kb on + strandat 968.180 kb on - strandat 968.212 kb on - strand, within CSW01_19205at 968.212 kb on - strand, within CSW01_19205at 968.292 kb on + strand, within CSW01_19205at 968.383 kb on + strand, within CSW01_19205at 968.391 kb on - strand, within CSW01_19205at 968.404 kb on - strand, within CSW01_19205at 968.431 kb on + strand, within CSW01_19205at 968.460 kb on - strand, within CSW01_19205at 968.553 kb on + strand, within CSW01_19205at 968.566 kb on + strand, within CSW01_19205at 968.574 kb on - strand, within CSW01_19205at 968.622 kb on + strand, within CSW01_19205at 968.622 kb on + strand, within CSW01_19205at 968.622 kb on + strand, within CSW01_19205at 968.622 kb on + strand, within CSW01_19205at 968.622 kb on + strand, within CSW01_19205at 968.622 kb on + strand, within CSW01_19205at 968.622 kb on + strand, within CSW01_19205at 968.622 kb on + strand, within CSW01_19205at 968.622 kb on + strand, within CSW01_19205at 968.630 kb on - strand, within CSW01_19205at 968.630 kb on - strand, within CSW01_19205at 968.630 kb on - strand, within CSW01_19205at 968.630 kb on - strand, within CSW01_19205at 968.630 kb on - strand, within CSW01_19205at 968.630 kb on - strand, within CSW01_19205at 968.648 kb on + strand, within CSW01_19205at 968.657 kb on + strand, within CSW01_19205at 968.657 kb on + strand, within CSW01_19205at 968.665 kb on - strand, within CSW01_19205at 968.681 kb on - strand, within CSW01_19205at 968.783 kb on + strand, within CSW01_19205at 968.783 kb on + strand, within CSW01_19205at 968.783 kb on + strand, within CSW01_19205at 968.783 kb on + strand, within CSW01_19205at 968.783 kb on + strand, within CSW01_19205at 968.783 kb on + strand, within CSW01_19205at 968.791 kb on - strand, within CSW01_19205at 968.791 kb on - strand, within CSW01_19205at 968.791 kb on - strand, within CSW01_19205at 969.059 kb on + strand, within CSW01_19205at 969.211 kb on + strand, within CSW01_19205at 969.221 kb on - strand, within CSW01_19205at 969.226 kb on + strand, within CSW01_19205at 969.324 kb on - strand, within CSW01_19205at 969.390 kb on - strand, within CSW01_19205at 969.414 kb on + strand, within CSW01_19205at 969.422 kb on - strand, within CSW01_19205at 969.422 kb on - strand, within CSW01_19205at 969.422 kb on - strand, within CSW01_19205at 969.422 kb on - strand, within CSW01_19205at 969.438 kb on + strand, within CSW01_19205at 969.446 kb on - strand, within CSW01_19205at 969.446 kb on - strand, within CSW01_19205at 969.446 kb on - strand, within CSW01_19205at 969.446 kb on - strand, within CSW01_19205at 969.494 kb on + strand, within CSW01_19205at 969.502 kb on - strand, within CSW01_19205at 969.569 kb on - strand, within CSW01_19205at 969.584 kb on + strand, within CSW01_19205at 969.634 kb on - strand, within CSW01_19205at 969.783 kb on - strandat 969.813 kb on + strandat 969.865 kb on + strandat 969.913 kb on - strandat 969.923 kb on + strandat 969.931 kb on - strandat 969.933 kb on + strandat 970.080 kb on - strand, within CSW01_19210at 970.155 kb on - strand, within CSW01_19210at 970.399 kb on + strandat 970.406 kb on + strandat 970.622 kb on - strandat 970.663 kb on + strandat 970.663 kb on + strandat 970.779 kb on + strand, within CSW01_19215at 970.799 kb on + strand, within CSW01_19215at 970.821 kb on - strand, within CSW01_19215at 970.855 kb on - strand, within CSW01_19215at 970.857 kb on + strand, within CSW01_19215at 970.859 kb on - strand, within CSW01_19215

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11A
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967,015 - CSW01_19195 0.66 -0.2
967,036 - CSW01_19195 0.68 +0.8
967,073 - CSW01_19195 0.72 -0.6
967,078 + CSW01_19195 0.73 +0.8
967,078 + CSW01_19195 0.73 +1.3
967,078 + CSW01_19195 0.73 +0.4
967,117 - CSW01_19195 0.77 +0.3
967,147 + CSW01_19195 0.80 -0.3
967,249 + +0.6
967,259 + +1.0
967,300 + +1.6
967,406 + -0.6
967,443 - +0.8
967,453 - +0.2
967,453 - +0.2
967,760 + CSW01_19200 0.88 +0.3
967,768 - -0.5
967,796 + -0.4
967,804 - +1.5
968,110 - -0.9
968,110 - +0.5
968,140 - +0.6
968,172 + +0.2
968,180 - -0.0
968,212 - CSW01_19205 0.11 -1.3
968,212 - CSW01_19205 0.11 -0.0
968,292 + CSW01_19205 0.15 -0.8
968,383 + CSW01_19205 0.20 +1.2
968,391 - CSW01_19205 0.20 -0.4
968,404 - CSW01_19205 0.21 -0.4
968,431 + CSW01_19205 0.23 -0.6
968,460 - CSW01_19205 0.24 +0.6
968,553 + CSW01_19205 0.29 -0.2
968,566 + CSW01_19205 0.30 +0.3
968,574 - CSW01_19205 0.30 -0.1
968,622 + CSW01_19205 0.33 -0.4
968,622 + CSW01_19205 0.33 +0.6
968,622 + CSW01_19205 0.33 -1.0
968,622 + CSW01_19205 0.33 +0.1
968,622 + CSW01_19205 0.33 +1.8
968,622 + CSW01_19205 0.33 -1.1
968,622 + CSW01_19205 0.33 -0.5
968,622 + CSW01_19205 0.33 -1.0
968,622 + CSW01_19205 0.33 -0.6
968,630 - CSW01_19205 0.33 -1.1
968,630 - CSW01_19205 0.33 -0.1
968,630 - CSW01_19205 0.33 +1.5
968,630 - CSW01_19205 0.33 -0.6
968,630 - CSW01_19205 0.33 +0.3
968,630 - CSW01_19205 0.33 +0.1
968,648 + CSW01_19205 0.34 -1.0
968,657 + CSW01_19205 0.35 -0.7
968,657 + CSW01_19205 0.35 -1.3
968,665 - CSW01_19205 0.35 -1.9
968,681 - CSW01_19205 0.36 +0.2
968,783 + CSW01_19205 0.41 +0.5
968,783 + CSW01_19205 0.41 -0.7
968,783 + CSW01_19205 0.41 -0.7
968,783 + CSW01_19205 0.41 +0.0
968,783 + CSW01_19205 0.41 -1.8
968,783 + CSW01_19205 0.41 -1.1
968,791 - CSW01_19205 0.42 -0.9
968,791 - CSW01_19205 0.42 -0.3
968,791 - CSW01_19205 0.42 -0.4
969,059 + CSW01_19205 0.56 -0.5
969,211 + CSW01_19205 0.64 -0.5
969,221 - CSW01_19205 0.65 -0.7
969,226 + CSW01_19205 0.65 -0.0
969,324 - CSW01_19205 0.70 -0.1
969,390 - CSW01_19205 0.74 -0.0
969,414 + CSW01_19205 0.75 -0.4
969,422 - CSW01_19205 0.76 +0.3
969,422 - CSW01_19205 0.76 -0.2
969,422 - CSW01_19205 0.76 -1.3
969,422 - CSW01_19205 0.76 -0.9
969,438 + CSW01_19205 0.77 -0.0
969,446 - CSW01_19205 0.77 -0.4
969,446 - CSW01_19205 0.77 +0.0
969,446 - CSW01_19205 0.77 -0.9
969,446 - CSW01_19205 0.77 -0.5
969,494 + CSW01_19205 0.80 +0.1
969,502 - CSW01_19205 0.80 -0.0
969,569 - CSW01_19205 0.84 -0.7
969,584 + CSW01_19205 0.84 +0.3
969,634 - CSW01_19205 0.87 -0.0
969,783 - -0.6
969,813 + +0.1
969,865 + +1.2
969,913 - -0.2
969,923 + +0.5
969,931 - -0.4
969,933 + -0.1
970,080 - CSW01_19210 0.32 +1.4
970,155 - CSW01_19210 0.62 +0.9
970,399 + -0.1
970,406 + -1.3
970,622 - -0.1
970,663 + -1.1
970,663 + -1.9
970,779 + CSW01_19215 0.20 +0.2
970,799 + CSW01_19215 0.23 -0.6
970,821 - CSW01_19215 0.26 +0.7
970,855 - CSW01_19215 0.30 -0.2
970,857 + CSW01_19215 0.30 +0.5
970,859 - CSW01_19215 0.30 +0.1

Or see this region's nucleotide sequence