Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19100

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_19090 and CSW01_19095 are separated by 130 nucleotidesCSW01_19095 and CSW01_19100 are separated by 89 nucleotidesCSW01_19100 and CSW01_19105 are separated by 149 nucleotidesCSW01_19105 and CSW01_19110 are separated by 71 nucleotides CSW01_19090: CSW01_19090 - ABC transporter ATP-binding protein, at 947,845 to 949,704 _19090 CSW01_19095: CSW01_19095 - DUF445 domain-containing protein, at 949,835 to 950,560 _19095 CSW01_19100: CSW01_19100 - alkene reductase, at 950,650 to 951,693 _19100 CSW01_19105: CSW01_19105 - TetR/AcrR family transcriptional regulator, at 951,843 to 952,418 _19105 CSW01_19110: CSW01_19110 - LysE family translocator, at 952,490 to 953,119 _19110 Position (kb) 950 951 952Strain fitness (log2 ratio) -2 -1 0 1 2at 949.722 kb on - strandat 949.722 kb on - strandat 949.727 kb on - strandat 949.727 kb on - strandat 949.727 kb on - strandat 949.868 kb on - strandat 949.897 kb on + strandat 949.986 kb on + strand, within CSW01_19095at 950.004 kb on - strand, within CSW01_19095at 950.023 kb on - strand, within CSW01_19095at 950.201 kb on - strand, within CSW01_19095at 950.287 kb on + strand, within CSW01_19095at 950.302 kb on + strand, within CSW01_19095at 950.327 kb on + strand, within CSW01_19095at 950.371 kb on - strand, within CSW01_19095at 950.415 kb on + strand, within CSW01_19095at 950.768 kb on - strand, within CSW01_19100at 950.816 kb on + strand, within CSW01_19100at 950.816 kb on + strand, within CSW01_19100at 950.837 kb on - strand, within CSW01_19100at 950.839 kb on + strand, within CSW01_19100at 951.021 kb on + strand, within CSW01_19100at 951.242 kb on + strand, within CSW01_19100at 951.274 kb on - strand, within CSW01_19100at 951.278 kb on + strand, within CSW01_19100at 951.278 kb on + strand, within CSW01_19100at 951.281 kb on - strand, within CSW01_19100at 951.310 kb on + strand, within CSW01_19100at 951.318 kb on - strand, within CSW01_19100at 951.318 kb on - strand, within CSW01_19100at 951.327 kb on - strand, within CSW01_19100at 951.351 kb on - strand, within CSW01_19100at 951.387 kb on + strand, within CSW01_19100at 951.438 kb on + strand, within CSW01_19100at 951.472 kb on - strand, within CSW01_19100at 951.474 kb on + strand, within CSW01_19100at 951.474 kb on + strand, within CSW01_19100at 951.482 kb on - strand, within CSW01_19100at 951.493 kb on + strand, within CSW01_19100at 951.493 kb on + strand, within CSW01_19100at 951.501 kb on - strand, within CSW01_19100at 951.510 kb on + strand, within CSW01_19100at 951.610 kb on - strandat 951.610 kb on - strandat 951.613 kb on + strandat 951.691 kb on + strandat 951.909 kb on + strand, within CSW01_19105at 951.952 kb on + strand, within CSW01_19105at 952.086 kb on + strand, within CSW01_19105at 952.087 kb on + strand, within CSW01_19105at 952.092 kb on + strand, within CSW01_19105at 952.095 kb on - strand, within CSW01_19105at 952.105 kb on - strand, within CSW01_19105at 952.253 kb on + strand, within CSW01_19105at 952.295 kb on - strand, within CSW01_19105at 952.365 kb on + strandat 952.365 kb on + strandat 952.582 kb on + strand, within CSW01_19110at 952.604 kb on + strand, within CSW01_19110at 952.613 kb on - strand, within CSW01_19110at 952.645 kb on - strand, within CSW01_19110at 952.653 kb on + strand, within CSW01_19110at 952.653 kb on + strand, within CSW01_19110at 952.659 kb on - strand, within CSW01_19110at 952.661 kb on - strand, within CSW01_19110

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11A
remove
949,722 - -0.7
949,722 - -0.3
949,727 - -0.3
949,727 - -1.1
949,727 - -1.1
949,868 - -1.2
949,897 + +0.6
949,986 + CSW01_19095 0.21 -0.1
950,004 - CSW01_19095 0.23 -0.9
950,023 - CSW01_19095 0.26 +0.1
950,201 - CSW01_19095 0.50 -1.3
950,287 + CSW01_19095 0.62 -0.4
950,302 + CSW01_19095 0.64 +0.0
950,327 + CSW01_19095 0.68 -0.6
950,371 - CSW01_19095 0.74 +0.0
950,415 + CSW01_19095 0.80 -1.7
950,768 - CSW01_19100 0.11 +1.9
950,816 + CSW01_19100 0.16 +1.1
950,816 + CSW01_19100 0.16 -0.8
950,837 - CSW01_19100 0.18 -0.3
950,839 + CSW01_19100 0.18 -1.4
951,021 + CSW01_19100 0.36 -1.0
951,242 + CSW01_19100 0.57 +0.5
951,274 - CSW01_19100 0.60 -0.5
951,278 + CSW01_19100 0.60 +0.8
951,278 + CSW01_19100 0.60 -0.7
951,281 - CSW01_19100 0.60 -1.1
951,310 + CSW01_19100 0.63 +0.2
951,318 - CSW01_19100 0.64 -1.0
951,318 - CSW01_19100 0.64 -0.1
951,327 - CSW01_19100 0.65 +0.2
951,351 - CSW01_19100 0.67 -1.0
951,387 + CSW01_19100 0.71 +0.2
951,438 + CSW01_19100 0.75 -0.6
951,472 - CSW01_19100 0.79 +0.5
951,474 + CSW01_19100 0.79 -0.7
951,474 + CSW01_19100 0.79 +0.9
951,482 - CSW01_19100 0.80 -1.1
951,493 + CSW01_19100 0.81 +1.3
951,493 + CSW01_19100 0.81 +0.5
951,501 - CSW01_19100 0.82 -0.3
951,510 + CSW01_19100 0.82 +0.5
951,610 - -2.0
951,610 - -0.4
951,613 + +0.1
951,691 + +0.8
951,909 + CSW01_19105 0.11 +0.1
951,952 + CSW01_19105 0.19 +0.3
952,086 + CSW01_19105 0.42 -1.5
952,087 + CSW01_19105 0.42 -0.3
952,092 + CSW01_19105 0.43 -0.5
952,095 - CSW01_19105 0.44 -0.2
952,105 - CSW01_19105 0.45 -1.0
952,253 + CSW01_19105 0.71 +1.3
952,295 - CSW01_19105 0.78 +0.6
952,365 + -0.7
952,365 + +1.7
952,582 + CSW01_19110 0.15 +0.3
952,604 + CSW01_19110 0.18 +0.0
952,613 - CSW01_19110 0.20 -0.5
952,645 - CSW01_19110 0.25 -1.1
952,653 + CSW01_19110 0.26 -0.3
952,653 + CSW01_19110 0.26 +1.1
952,659 - CSW01_19110 0.27 +0.1
952,661 - CSW01_19110 0.27 -0.1

Or see this region's nucleotide sequence