Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17555

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17550 and CSW01_17555 are separated by 239 nucleotidesCSW01_17555 and CSW01_17560 are separated by 50 nucleotidesCSW01_17560 and CSW01_17565 overlap by 11 nucleotides CSW01_17550: CSW01_17550 - nuclear transport factor 2 family protein, at 605,024 to 606,040 _17550 CSW01_17555: CSW01_17555 - LacI family transcriptional regulator, at 606,280 to 607,311 _17555 CSW01_17560: CSW01_17560 - DNA-binding response regulator, at 607,362 to 607,988 _17560 CSW01_17565: CSW01_17565 - nitrate/nitrite two-component system sensor histidine kinase NarQ, at 607,978 to 609,729 _17565 Position (kb) 606 607 608Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 605.345 kb on - strand, within CSW01_17550at 605.386 kb on + strand, within CSW01_17550at 605.386 kb on + strand, within CSW01_17550at 605.386 kb on + strand, within CSW01_17550at 605.392 kb on - strand, within CSW01_17550at 605.423 kb on + strand, within CSW01_17550at 605.464 kb on + strand, within CSW01_17550at 605.505 kb on + strand, within CSW01_17550at 605.513 kb on - strand, within CSW01_17550at 605.524 kb on - strand, within CSW01_17550at 605.571 kb on + strand, within CSW01_17550at 605.610 kb on - strand, within CSW01_17550at 605.627 kb on + strand, within CSW01_17550at 605.632 kb on + strand, within CSW01_17550at 605.635 kb on - strand, within CSW01_17550at 605.635 kb on - strand, within CSW01_17550at 605.635 kb on - strand, within CSW01_17550at 605.648 kb on - strand, within CSW01_17550at 605.748 kb on - strand, within CSW01_17550at 605.806 kb on + strand, within CSW01_17550at 605.814 kb on - strand, within CSW01_17550at 605.931 kb on + strand, within CSW01_17550at 605.931 kb on + strand, within CSW01_17550at 605.931 kb on + strand, within CSW01_17550at 605.933 kb on + strand, within CSW01_17550at 605.939 kb on - strandat 605.939 kb on - strandat 605.939 kb on - strandat 605.939 kb on - strandat 605.984 kb on - strandat 605.990 kb on + strandat 605.991 kb on + strandat 605.999 kb on - strandat 606.155 kb on - strandat 606.204 kb on + strandat 606.272 kb on - strandat 606.282 kb on - strandat 606.476 kb on + strand, within CSW01_17555at 606.482 kb on + strand, within CSW01_17555at 606.520 kb on + strand, within CSW01_17555at 606.595 kb on + strand, within CSW01_17555at 606.619 kb on + strand, within CSW01_17555at 606.795 kb on + strand, within CSW01_17555at 606.795 kb on + strand, within CSW01_17555at 606.825 kb on - strand, within CSW01_17555at 606.954 kb on - strand, within CSW01_17555at 607.042 kb on + strand, within CSW01_17555at 607.050 kb on - strand, within CSW01_17555at 607.063 kb on + strand, within CSW01_17555at 607.117 kb on - strand, within CSW01_17555at 607.117 kb on - strand, within CSW01_17555at 607.157 kb on + strand, within CSW01_17555at 607.157 kb on + strand, within CSW01_17555at 607.165 kb on - strand, within CSW01_17555at 607.243 kb on + strandat 607.267 kb on - strandat 607.285 kb on - strandat 607.368 kb on - strandat 607.507 kb on + strand, within CSW01_17560at 607.525 kb on - strand, within CSW01_17560at 607.552 kb on - strand, within CSW01_17560at 607.561 kb on + strand, within CSW01_17560at 607.636 kb on + strand, within CSW01_17560at 607.663 kb on + strand, within CSW01_17560at 607.731 kb on + strand, within CSW01_17560at 607.731 kb on + strand, within CSW01_17560at 607.731 kb on + strand, within CSW01_17560at 607.731 kb on + strand, within CSW01_17560at 607.739 kb on - strand, within CSW01_17560at 607.739 kb on - strand, within CSW01_17560at 607.767 kb on - strand, within CSW01_17560at 607.769 kb on + strand, within CSW01_17560at 607.777 kb on - strand, within CSW01_17560at 607.792 kb on - strand, within CSW01_17560at 607.879 kb on - strand, within CSW01_17560at 608.035 kb on - strandat 608.057 kb on + strandat 608.182 kb on + strand, within CSW01_17565at 608.185 kb on - strand, within CSW01_17565at 608.185 kb on - strand, within CSW01_17565at 608.224 kb on - strand, within CSW01_17565

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11A
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605,345 - CSW01_17550 0.32 +0.1
605,386 + CSW01_17550 0.36 -0.5
605,386 + CSW01_17550 0.36 -0.3
605,386 + CSW01_17550 0.36 -0.2
605,392 - CSW01_17550 0.36 -0.7
605,423 + CSW01_17550 0.39 +0.1
605,464 + CSW01_17550 0.43 -1.0
605,505 + CSW01_17550 0.47 -1.5
605,513 - CSW01_17550 0.48 +0.0
605,524 - CSW01_17550 0.49 +1.8
605,571 + CSW01_17550 0.54 -1.1
605,610 - CSW01_17550 0.58 -0.3
605,627 + CSW01_17550 0.59 +0.3
605,632 + CSW01_17550 0.60 -0.4
605,635 - CSW01_17550 0.60 -0.3
605,635 - CSW01_17550 0.60 +0.0
605,635 - CSW01_17550 0.60 +0.9
605,648 - CSW01_17550 0.61 +0.5
605,748 - CSW01_17550 0.71 -0.7
605,806 + CSW01_17550 0.77 +0.1
605,814 - CSW01_17550 0.78 -1.0
605,931 + CSW01_17550 0.89 -0.9
605,931 + CSW01_17550 0.89 -1.2
605,931 + CSW01_17550 0.89 -2.0
605,933 + CSW01_17550 0.89 +0.2
605,939 - +0.8
605,939 - +0.2
605,939 - +0.2
605,939 - -2.1
605,984 - -0.3
605,990 + +0.4
605,991 + +0.3
605,999 - +0.6
606,155 - +0.3
606,204 + +0.1
606,272 - +0.2
606,282 - +0.4
606,476 + CSW01_17555 0.19 -0.7
606,482 + CSW01_17555 0.20 -1.2
606,520 + CSW01_17555 0.23 -0.7
606,595 + CSW01_17555 0.31 -1.2
606,619 + CSW01_17555 0.33 +0.2
606,795 + CSW01_17555 0.50 -0.4
606,795 + CSW01_17555 0.50 -2.8
606,825 - CSW01_17555 0.53 -1.4
606,954 - CSW01_17555 0.65 -2.1
607,042 + CSW01_17555 0.74 -0.3
607,050 - CSW01_17555 0.75 +1.3
607,063 + CSW01_17555 0.76 +1.0
607,117 - CSW01_17555 0.81 +0.1
607,117 - CSW01_17555 0.81 +1.1
607,157 + CSW01_17555 0.85 -0.3
607,157 + CSW01_17555 0.85 -1.0
607,165 - CSW01_17555 0.86 -0.5
607,243 + +0.4
607,267 - -0.8
607,285 - +0.4
607,368 - +0.0
607,507 + CSW01_17560 0.23 -0.4
607,525 - CSW01_17560 0.26 +0.4
607,552 - CSW01_17560 0.30 +0.1
607,561 + CSW01_17560 0.32 +0.1
607,636 + CSW01_17560 0.44 +0.1
607,663 + CSW01_17560 0.48 -0.2
607,731 + CSW01_17560 0.59 +0.4
607,731 + CSW01_17560 0.59 +0.3
607,731 + CSW01_17560 0.59 -0.2
607,731 + CSW01_17560 0.59 +0.1
607,739 - CSW01_17560 0.60 -0.7
607,739 - CSW01_17560 0.60 -0.5
607,767 - CSW01_17560 0.65 -0.9
607,769 + CSW01_17560 0.65 -0.0
607,777 - CSW01_17560 0.66 +0.0
607,792 - CSW01_17560 0.69 +0.4
607,879 - CSW01_17560 0.82 -1.0
608,035 - +0.1
608,057 + -0.9
608,182 + CSW01_17565 0.12 +0.1
608,185 - CSW01_17565 0.12 +0.1
608,185 - CSW01_17565 0.12 +0.0
608,224 - CSW01_17565 0.14 +0.3

Or see this region's nucleotide sequence