Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17170

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17160 and CSW01_17165 overlap by 4 nucleotidesCSW01_17165 and CSW01_17170 are separated by 83 nucleotidesCSW01_17170 and CSW01_17175 overlap by 4 nucleotides CSW01_17160: CSW01_17160 - TetR/AcrR family transcriptional regulator, at 521,942 to 522,538 _17160 CSW01_17165: CSW01_17165 - DUF296 domain-containing protein, at 522,535 to 522,927 _17165 CSW01_17170: CSW01_17170 - ABC transporter ATP-binding protein, at 523,011 to 524,603 _17170 CSW01_17175: CSW01_17175 - ABC transporter permease, at 524,600 to 525,658 _17175 Position (kb) 523 524 525Strain fitness (log2 ratio) -2 -1 0 1 2 3at 522.071 kb on - strand, within CSW01_17160at 522.221 kb on + strand, within CSW01_17160at 522.229 kb on - strand, within CSW01_17160at 522.400 kb on + strand, within CSW01_17160at 522.410 kb on - strand, within CSW01_17160at 522.427 kb on + strand, within CSW01_17160at 522.435 kb on - strand, within CSW01_17160at 522.455 kb on + strand, within CSW01_17160at 522.455 kb on + strand, within CSW01_17160at 522.509 kb on - strandat 522.534 kb on - strandat 522.558 kb on - strandat 522.610 kb on + strand, within CSW01_17165at 522.610 kb on + strand, within CSW01_17165at 522.618 kb on - strand, within CSW01_17165at 522.637 kb on - strand, within CSW01_17165at 522.800 kb on - strand, within CSW01_17165at 522.858 kb on - strand, within CSW01_17165at 522.913 kb on + strandat 523.042 kb on + strandat 523.048 kb on - strandat 523.071 kb on + strandat 523.071 kb on + strandat 523.079 kb on - strandat 523.113 kb on - strandat 523.135 kb on + strandat 523.236 kb on + strand, within CSW01_17170at 523.247 kb on + strand, within CSW01_17170at 523.284 kb on - strand, within CSW01_17170at 523.422 kb on - strand, within CSW01_17170at 523.449 kb on - strand, within CSW01_17170at 523.449 kb on - strand, within CSW01_17170at 523.494 kb on - strand, within CSW01_17170at 523.550 kb on - strand, within CSW01_17170at 523.634 kb on - strand, within CSW01_17170at 523.688 kb on - strand, within CSW01_17170at 523.713 kb on + strand, within CSW01_17170at 523.713 kb on + strand, within CSW01_17170at 523.720 kb on - strand, within CSW01_17170at 523.844 kb on + strand, within CSW01_17170at 523.846 kb on + strand, within CSW01_17170at 523.852 kb on - strand, within CSW01_17170at 524.047 kb on - strand, within CSW01_17170at 524.048 kb on - strand, within CSW01_17170at 524.088 kb on + strand, within CSW01_17170at 524.088 kb on + strand, within CSW01_17170at 524.133 kb on - strand, within CSW01_17170at 524.149 kb on + strand, within CSW01_17170at 524.234 kb on - strand, within CSW01_17170at 524.250 kb on + strand, within CSW01_17170at 524.284 kb on + strand, within CSW01_17170at 524.292 kb on - strand, within CSW01_17170at 524.292 kb on - strand, within CSW01_17170at 524.292 kb on - strand, within CSW01_17170at 524.362 kb on - strand, within CSW01_17170at 524.362 kb on - strand, within CSW01_17170at 524.367 kb on - strand, within CSW01_17170at 524.372 kb on - strand, within CSW01_17170at 524.372 kb on - strand, within CSW01_17170at 524.407 kb on - strand, within CSW01_17170at 524.409 kb on - strand, within CSW01_17170at 524.516 kb on + strandat 524.516 kb on + strandat 524.516 kb on + strandat 524.519 kb on - strandat 524.549 kb on - strandat 524.598 kb on - strandat 524.662 kb on - strandat 524.730 kb on + strand, within CSW01_17175at 524.730 kb on + strand, within CSW01_17175at 524.730 kb on + strand, within CSW01_17175at 524.809 kb on + strand, within CSW01_17175at 524.859 kb on + strand, within CSW01_17175at 524.999 kb on - strand, within CSW01_17175at 525.084 kb on + strand, within CSW01_17175at 525.099 kb on - strand, within CSW01_17175at 525.115 kb on + strand, within CSW01_17175at 525.444 kb on + strand, within CSW01_17175at 525.444 kb on + strand, within CSW01_17175at 525.477 kb on + strand, within CSW01_17175at 525.485 kb on - strand, within CSW01_17175at 525.485 kb on - strand, within CSW01_17175

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11A
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522,071 - CSW01_17160 0.22 -0.6
522,221 + CSW01_17160 0.47 -1.8
522,229 - CSW01_17160 0.48 +0.9
522,400 + CSW01_17160 0.77 +0.5
522,410 - CSW01_17160 0.78 +1.1
522,427 + CSW01_17160 0.81 +0.8
522,435 - CSW01_17160 0.83 -1.6
522,455 + CSW01_17160 0.86 +3.0
522,455 + CSW01_17160 0.86 -0.1
522,509 - +3.1
522,534 - +0.4
522,558 - -0.2
522,610 + CSW01_17165 0.19 +0.5
522,610 + CSW01_17165 0.19 +0.3
522,618 - CSW01_17165 0.21 -0.6
522,637 - CSW01_17165 0.26 +0.5
522,800 - CSW01_17165 0.67 +0.0
522,858 - CSW01_17165 0.82 -0.3
522,913 + +0.0
523,042 + -0.3
523,048 - -0.6
523,071 + -1.2
523,071 + +2.1
523,079 - -0.6
523,113 - -0.9
523,135 + +0.6
523,236 + CSW01_17170 0.14 +0.1
523,247 + CSW01_17170 0.15 -0.4
523,284 - CSW01_17170 0.17 +2.7
523,422 - CSW01_17170 0.26 +1.4
523,449 - CSW01_17170 0.27 -0.1
523,449 - CSW01_17170 0.27 +0.7
523,494 - CSW01_17170 0.30 +0.1
523,550 - CSW01_17170 0.34 -0.0
523,634 - CSW01_17170 0.39 +0.4
523,688 - CSW01_17170 0.42 +1.1
523,713 + CSW01_17170 0.44 -1.2
523,713 + CSW01_17170 0.44 +0.1
523,720 - CSW01_17170 0.45 +0.1
523,844 + CSW01_17170 0.52 +0.6
523,846 + CSW01_17170 0.52 +0.3
523,852 - CSW01_17170 0.53 -1.4
524,047 - CSW01_17170 0.65 +0.3
524,048 - CSW01_17170 0.65 +1.1
524,088 + CSW01_17170 0.68 -0.5
524,088 + CSW01_17170 0.68 +0.7
524,133 - CSW01_17170 0.70 -0.1
524,149 + CSW01_17170 0.71 -0.6
524,234 - CSW01_17170 0.77 +0.2
524,250 + CSW01_17170 0.78 +0.5
524,284 + CSW01_17170 0.80 +0.1
524,292 - CSW01_17170 0.80 +0.1
524,292 - CSW01_17170 0.80 -0.1
524,292 - CSW01_17170 0.80 +0.1
524,362 - CSW01_17170 0.85 +0.7
524,362 - CSW01_17170 0.85 +0.6
524,367 - CSW01_17170 0.85 +0.7
524,372 - CSW01_17170 0.85 +0.4
524,372 - CSW01_17170 0.85 -0.0
524,407 - CSW01_17170 0.88 +0.0
524,409 - CSW01_17170 0.88 -0.1
524,516 + -0.1
524,516 + +0.4
524,516 + +0.9
524,519 - -2.3
524,549 - +0.1
524,598 - +0.5
524,662 - -0.2
524,730 + CSW01_17175 0.12 +0.3
524,730 + CSW01_17175 0.12 +1.0
524,730 + CSW01_17175 0.12 -0.3
524,809 + CSW01_17175 0.20 +0.3
524,859 + CSW01_17175 0.24 -0.6
524,999 - CSW01_17175 0.38 -0.1
525,084 + CSW01_17175 0.46 +0.3
525,099 - CSW01_17175 0.47 -0.2
525,115 + CSW01_17175 0.49 +0.6
525,444 + CSW01_17175 0.80 -0.5
525,444 + CSW01_17175 0.80 -0.2
525,477 + CSW01_17175 0.83 -0.3
525,485 - CSW01_17175 0.84 +0.2
525,485 - CSW01_17175 0.84 +0.0

Or see this region's nucleotide sequence