Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14600

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14595 and CSW01_14600 are separated by 2 nucleotidesCSW01_14600 and CSW01_14605 overlap by 31 nucleotidesCSW01_14605 and CSW01_14610 are separated by 9 nucleotides CSW01_14595: CSW01_14595 - type VI secretion system ATPase TssH, at 126,176 to 128,785 _14595 CSW01_14600: CSW01_14600 - AAA family ATPase, at 128,788 to 130,380 _14600 CSW01_14605: CSW01_14605 - type VI secretion system-associated protein TagO, at 130,350 to 131,033 _14605 CSW01_14610: CSW01_14610 - type VI secretion system protein TssA, at 131,043 to 132,452 _14610 Position (kb) 128 129 130 131Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 127.808 kb on + strand, within CSW01_14595at 127.808 kb on + strand, within CSW01_14595at 127.817 kb on + strand, within CSW01_14595at 127.858 kb on + strand, within CSW01_14595at 127.866 kb on + strand, within CSW01_14595at 127.874 kb on - strand, within CSW01_14595at 127.874 kb on - strand, within CSW01_14595at 128.071 kb on + strand, within CSW01_14595at 128.071 kb on + strand, within CSW01_14595at 128.079 kb on - strand, within CSW01_14595at 128.079 kb on - strand, within CSW01_14595at 128.164 kb on - strand, within CSW01_14595at 128.189 kb on + strand, within CSW01_14595at 128.202 kb on - strand, within CSW01_14595at 128.202 kb on - strand, within CSW01_14595at 128.202 kb on - strand, within CSW01_14595at 128.312 kb on + strand, within CSW01_14595at 128.312 kb on + strand, within CSW01_14595at 128.312 kb on + strand, within CSW01_14595at 128.312 kb on + strand, within CSW01_14595at 128.320 kb on - strand, within CSW01_14595at 128.320 kb on - strand, within CSW01_14595at 128.326 kb on - strand, within CSW01_14595at 128.418 kb on - strand, within CSW01_14595at 128.422 kb on + strand, within CSW01_14595at 128.430 kb on - strand, within CSW01_14595at 128.430 kb on - strand, within CSW01_14595at 128.430 kb on - strand, within CSW01_14595at 128.446 kb on + strand, within CSW01_14595at 128.446 kb on + strand, within CSW01_14595at 128.454 kb on - strand, within CSW01_14595at 128.484 kb on - strand, within CSW01_14595at 128.495 kb on - strand, within CSW01_14595at 128.495 kb on - strand, within CSW01_14595at 128.497 kb on + strand, within CSW01_14595at 128.554 kb on + strandat 128.571 kb on + strandat 128.609 kb on + strandat 128.609 kb on + strandat 128.609 kb on + strandat 128.617 kb on - strandat 128.701 kb on + strandat 128.879 kb on + strandat 128.879 kb on + strandat 128.887 kb on - strandat 128.907 kb on - strandat 129.001 kb on + strand, within CSW01_14600at 129.019 kb on - strand, within CSW01_14600at 129.114 kb on + strand, within CSW01_14600at 129.162 kb on + strand, within CSW01_14600at 129.250 kb on + strand, within CSW01_14600at 129.260 kb on - strand, within CSW01_14600at 129.260 kb on - strand, within CSW01_14600at 129.284 kb on + strand, within CSW01_14600at 129.349 kb on + strand, within CSW01_14600at 129.437 kb on - strand, within CSW01_14600at 129.447 kb on + strand, within CSW01_14600at 129.477 kb on - strand, within CSW01_14600at 129.477 kb on - strand, within CSW01_14600at 129.509 kb on + strand, within CSW01_14600at 129.533 kb on + strand, within CSW01_14600at 129.636 kb on + strand, within CSW01_14600at 129.735 kb on + strand, within CSW01_14600at 129.743 kb on - strand, within CSW01_14600at 129.766 kb on - strand, within CSW01_14600at 129.766 kb on - strand, within CSW01_14600at 129.808 kb on - strand, within CSW01_14600at 129.845 kb on - strand, within CSW01_14600at 129.896 kb on + strand, within CSW01_14600at 129.896 kb on + strand, within CSW01_14600at 129.904 kb on - strand, within CSW01_14600at 129.918 kb on + strand, within CSW01_14600at 129.961 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.986 kb on + strand, within CSW01_14600at 129.994 kb on + strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 129.994 kb on - strand, within CSW01_14600at 130.047 kb on - strand, within CSW01_14600at 130.074 kb on + strand, within CSW01_14600at 130.082 kb on - strand, within CSW01_14600at 130.082 kb on - strand, within CSW01_14600at 130.082 kb on - strand, within CSW01_14600at 130.083 kb on - strand, within CSW01_14600at 130.083 kb on - strand, within CSW01_14600at 130.108 kb on + strand, within CSW01_14600at 130.113 kb on + strand, within CSW01_14600at 130.113 kb on + strand, within CSW01_14600at 130.113 kb on + strand, within CSW01_14600at 130.116 kb on - strand, within CSW01_14600at 130.118 kb on + strand, within CSW01_14600at 130.281 kb on - strandat 130.342 kb on + strandat 130.350 kb on - strandat 130.365 kb on + strandat 130.433 kb on + strand, within CSW01_14605at 130.479 kb on + strand, within CSW01_14605at 130.503 kb on + strand, within CSW01_14605at 130.545 kb on + strand, within CSW01_14605at 130.571 kb on + strand, within CSW01_14605at 130.571 kb on + strand, within CSW01_14605at 130.571 kb on + strand, within CSW01_14605at 130.571 kb on + strand, within CSW01_14605at 130.579 kb on - strand, within CSW01_14605at 130.579 kb on - strand, within CSW01_14605at 130.579 kb on - strand, within CSW01_14605at 130.598 kb on - strand, within CSW01_14605at 130.628 kb on + strand, within CSW01_14605at 130.628 kb on + strand, within CSW01_14605at 130.660 kb on + strand, within CSW01_14605at 130.668 kb on - strand, within CSW01_14605at 130.719 kb on - strand, within CSW01_14605at 131.179 kb on + strandat 131.179 kb on + strandat 131.187 kb on - strand, within CSW01_14610at 131.187 kb on - strand, within CSW01_14610at 131.199 kb on + strand, within CSW01_14610at 131.212 kb on + strand, within CSW01_14610at 131.220 kb on - strand, within CSW01_14610at 131.234 kb on + strand, within CSW01_14610at 131.242 kb on - strand, within CSW01_14610at 131.361 kb on - strand, within CSW01_14610

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11A
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127,808 + CSW01_14595 0.63 -0.3
127,808 + CSW01_14595 0.63 +0.8
127,817 + CSW01_14595 0.63 -0.1
127,858 + CSW01_14595 0.64 -0.2
127,866 + CSW01_14595 0.65 -0.6
127,874 - CSW01_14595 0.65 +0.4
127,874 - CSW01_14595 0.65 +0.1
128,071 + CSW01_14595 0.73 +1.0
128,071 + CSW01_14595 0.73 +1.1
128,079 - CSW01_14595 0.73 -1.1
128,079 - CSW01_14595 0.73 +0.9
128,164 - CSW01_14595 0.76 +0.1
128,189 + CSW01_14595 0.77 +0.4
128,202 - CSW01_14595 0.78 -0.2
128,202 - CSW01_14595 0.78 +1.1
128,202 - CSW01_14595 0.78 -0.2
128,312 + CSW01_14595 0.82 +1.8
128,312 + CSW01_14595 0.82 +0.4
128,312 + CSW01_14595 0.82 +0.5
128,312 + CSW01_14595 0.82 -0.4
128,320 - CSW01_14595 0.82 -0.8
128,320 - CSW01_14595 0.82 -0.2
128,326 - CSW01_14595 0.82 +0.8
128,418 - CSW01_14595 0.86 +1.4
128,422 + CSW01_14595 0.86 -0.8
128,430 - CSW01_14595 0.86 -0.1
128,430 - CSW01_14595 0.86 +0.2
128,430 - CSW01_14595 0.86 +0.4
128,446 + CSW01_14595 0.87 +1.1
128,446 + CSW01_14595 0.87 -0.2
128,454 - CSW01_14595 0.87 +0.4
128,484 - CSW01_14595 0.88 -0.6
128,495 - CSW01_14595 0.89 +0.7
128,495 - CSW01_14595 0.89 -0.5
128,497 + CSW01_14595 0.89 +0.5
128,554 + -0.1
128,571 + -0.1
128,609 + -0.1
128,609 + +0.0
128,609 + -0.4
128,617 - +1.2
128,701 + +1.0
128,879 + +1.1
128,879 + -0.2
128,887 - +0.5
128,907 - +0.5
129,001 + CSW01_14600 0.13 +1.8
129,019 - CSW01_14600 0.15 -0.2
129,114 + CSW01_14600 0.20 +0.5
129,162 + CSW01_14600 0.23 +0.4
129,250 + CSW01_14600 0.29 +0.1
129,260 - CSW01_14600 0.30 -0.4
129,260 - CSW01_14600 0.30 -1.9
129,284 + CSW01_14600 0.31 -0.0
129,349 + CSW01_14600 0.35 -0.5
129,437 - CSW01_14600 0.41 -0.5
129,447 + CSW01_14600 0.41 -0.4
129,477 - CSW01_14600 0.43 +0.8
129,477 - CSW01_14600 0.43 -1.3
129,509 + CSW01_14600 0.45 +0.4
129,533 + CSW01_14600 0.47 +0.2
129,636 + CSW01_14600 0.53 +0.1
129,735 + CSW01_14600 0.59 +1.3
129,743 - CSW01_14600 0.60 -0.1
129,766 - CSW01_14600 0.61 +0.9
129,766 - CSW01_14600 0.61 +0.1
129,808 - CSW01_14600 0.64 +0.5
129,845 - CSW01_14600 0.66 +0.0
129,896 + CSW01_14600 0.70 +0.7
129,896 + CSW01_14600 0.70 +0.5
129,904 - CSW01_14600 0.70 +0.4
129,918 + CSW01_14600 0.71 -0.4
129,961 + CSW01_14600 0.74 -0.1
129,986 + CSW01_14600 0.75 +0.2
129,986 + CSW01_14600 0.75 +0.1
129,986 + CSW01_14600 0.75 -0.3
129,986 + CSW01_14600 0.75 +0.7
129,986 + CSW01_14600 0.75 -0.5
129,986 + CSW01_14600 0.75 +1.0
129,986 + CSW01_14600 0.75 +0.3
129,986 + CSW01_14600 0.75 +0.4
129,986 + CSW01_14600 0.75 -0.4
129,986 + CSW01_14600 0.75 +0.3
129,986 + CSW01_14600 0.75 -0.5
129,994 + CSW01_14600 0.76 -0.3
129,994 - CSW01_14600 0.76 +1.1
129,994 - CSW01_14600 0.76 -1.5
129,994 - CSW01_14600 0.76 -1.1
129,994 - CSW01_14600 0.76 -0.2
129,994 - CSW01_14600 0.76 -0.5
129,994 - CSW01_14600 0.76 +0.1
129,994 - CSW01_14600 0.76 -1.0
129,994 - CSW01_14600 0.76 +0.4
129,994 - CSW01_14600 0.76 +0.2
129,994 - CSW01_14600 0.76 +1.0
130,047 - CSW01_14600 0.79 -1.1
130,074 + CSW01_14600 0.81 +0.5
130,082 - CSW01_14600 0.81 -0.2
130,082 - CSW01_14600 0.81 +0.4
130,082 - CSW01_14600 0.81 +0.4
130,083 - CSW01_14600 0.81 -0.4
130,083 - CSW01_14600 0.81 +1.1
130,108 + CSW01_14600 0.83 -0.5
130,113 + CSW01_14600 0.83 +0.2
130,113 + CSW01_14600 0.83 +0.2
130,113 + CSW01_14600 0.83 -0.2
130,116 - CSW01_14600 0.83 +0.1
130,118 + CSW01_14600 0.83 -0.5
130,281 - -0.5
130,342 + +0.4
130,350 - -1.0
130,365 + +0.1
130,433 + CSW01_14605 0.12 +0.8
130,479 + CSW01_14605 0.19 -0.5
130,503 + CSW01_14605 0.22 -0.1
130,545 + CSW01_14605 0.29 -0.9
130,571 + CSW01_14605 0.32 -1.3
130,571 + CSW01_14605 0.32 -2.5
130,571 + CSW01_14605 0.32 -0.5
130,571 + CSW01_14605 0.32 -0.7
130,579 - CSW01_14605 0.33 +0.0
130,579 - CSW01_14605 0.33 +0.8
130,579 - CSW01_14605 0.33 -1.1
130,598 - CSW01_14605 0.36 +2.7
130,628 + CSW01_14605 0.41 +0.5
130,628 + CSW01_14605 0.41 +0.3
130,660 + CSW01_14605 0.45 -0.5
130,668 - CSW01_14605 0.46 -0.7
130,719 - CSW01_14605 0.54 -0.0
131,179 + +0.5
131,179 + +1.3
131,187 - CSW01_14610 0.10 +0.3
131,187 - CSW01_14610 0.10 -0.5
131,199 + CSW01_14610 0.11 -2.9
131,212 + CSW01_14610 0.12 +0.2
131,220 - CSW01_14610 0.13 -0.5
131,234 + CSW01_14610 0.14 -0.5
131,242 - CSW01_14610 0.14 +0.4
131,361 - CSW01_14610 0.23 -1.7

Or see this region's nucleotide sequence