Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14465

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14460 and CSW01_14465 are separated by 255 nucleotidesCSW01_14465 and CSW01_14470 are separated by 229 nucleotidesCSW01_14470 and CSW01_14475 are separated by 170 nucleotides CSW01_14460: CSW01_14460 - dicarboxylate/amino acid:cation symporter, at 97,545 to 98,818 _14460 CSW01_14465: CSW01_14465 - EamA/RhaT family transporter, at 99,074 to 99,967 _14465 CSW01_14470: CSW01_14470 - DUF134 domain-containing protein, at 100,197 to 100,493 _14470 CSW01_14475: CSW01_14475 - cobinamide adenolsyltransferase, at 100,664 to 101,293 _14475 Position (kb) 99 100Strain fitness (log2 ratio) -3 -2 -1 0 1at 98.080 kb on + strand, within CSW01_14460at 98.088 kb on - strand, within CSW01_14460at 98.267 kb on + strand, within CSW01_14460at 98.269 kb on + strand, within CSW01_14460at 98.349 kb on + strand, within CSW01_14460at 98.349 kb on + strand, within CSW01_14460at 98.357 kb on - strand, within CSW01_14460at 98.357 kb on - strand, within CSW01_14460at 98.357 kb on - strand, within CSW01_14460at 98.357 kb on - strand, within CSW01_14460at 98.357 kb on - strand, within CSW01_14460at 98.494 kb on - strand, within CSW01_14460at 98.497 kb on + strand, within CSW01_14460at 98.497 kb on + strand, within CSW01_14460at 98.505 kb on - strand, within CSW01_14460at 98.505 kb on - strand, within CSW01_14460at 98.773 kb on + strandat 98.774 kb on - strandat 98.781 kb on - strandat 98.816 kb on - strandat 98.818 kb on + strandat 99.071 kb on - strandat 99.162 kb on - strandat 99.181 kb on - strand, within CSW01_14465at 99.181 kb on - strand, within CSW01_14465at 99.215 kb on - strand, within CSW01_14465at 99.272 kb on - strand, within CSW01_14465at 99.299 kb on + strand, within CSW01_14465at 99.309 kb on + strand, within CSW01_14465at 99.391 kb on - strand, within CSW01_14465at 99.446 kb on + strand, within CSW01_14465at 99.446 kb on + strand, within CSW01_14465at 99.454 kb on - strand, within CSW01_14465at 99.454 kb on - strand, within CSW01_14465at 99.456 kb on - strand, within CSW01_14465at 99.528 kb on + strand, within CSW01_14465at 99.528 kb on + strand, within CSW01_14465at 99.530 kb on + strand, within CSW01_14465at 99.554 kb on - strand, within CSW01_14465at 99.627 kb on - strand, within CSW01_14465at 99.669 kb on + strand, within CSW01_14465at 99.697 kb on + strand, within CSW01_14465at 99.796 kb on + strand, within CSW01_14465at 99.814 kb on - strand, within CSW01_14465at 99.819 kb on + strand, within CSW01_14465at 99.882 kb on - strandat 99.907 kb on + strandat 99.928 kb on + strandat 99.959 kb on - strandat 100.112 kb on - strandat 100.117 kb on - strandat 100.256 kb on + strand, within CSW01_14470at 100.274 kb on - strand, within CSW01_14470at 100.278 kb on + strand, within CSW01_14470at 100.322 kb on + strand, within CSW01_14470at 100.383 kb on + strand, within CSW01_14470at 100.383 kb on + strand, within CSW01_14470at 100.417 kb on + strand, within CSW01_14470at 100.425 kb on - strand, within CSW01_14470at 100.509 kb on + strandat 100.538 kb on - strandat 100.742 kb on + strand, within CSW01_14475at 100.745 kb on - strand, within CSW01_14475at 100.942 kb on - strand, within CSW01_14475at 100.952 kb on + strand, within CSW01_14475

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11A
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98,080 + CSW01_14460 0.42 -0.2
98,088 - CSW01_14460 0.43 -0.6
98,267 + CSW01_14460 0.57 +0.3
98,269 + CSW01_14460 0.57 +0.2
98,349 + CSW01_14460 0.63 +0.8
98,349 + CSW01_14460 0.63 -0.5
98,357 - CSW01_14460 0.64 -0.3
98,357 - CSW01_14460 0.64 +0.2
98,357 - CSW01_14460 0.64 -0.4
98,357 - CSW01_14460 0.64 +1.0
98,357 - CSW01_14460 0.64 -0.3
98,494 - CSW01_14460 0.74 -0.2
98,497 + CSW01_14460 0.75 +0.3
98,497 + CSW01_14460 0.75 -0.1
98,505 - CSW01_14460 0.75 -0.8
98,505 - CSW01_14460 0.75 -0.3
98,773 + -0.5
98,774 - -1.5
98,781 - -0.6
98,816 - +0.1
98,818 + -0.0
99,071 - +0.6
99,162 - -0.0
99,181 - CSW01_14465 0.12 -0.8
99,181 - CSW01_14465 0.12 +0.3
99,215 - CSW01_14465 0.16 -0.3
99,272 - CSW01_14465 0.22 -0.1
99,299 + CSW01_14465 0.25 -0.2
99,309 + CSW01_14465 0.26 -0.1
99,391 - CSW01_14465 0.35 -0.8
99,446 + CSW01_14465 0.42 -0.4
99,446 + CSW01_14465 0.42 +0.1
99,454 - CSW01_14465 0.43 -1.5
99,454 - CSW01_14465 0.43 -1.0
99,456 - CSW01_14465 0.43 -0.0
99,528 + CSW01_14465 0.51 +0.1
99,528 + CSW01_14465 0.51 -3.2
99,530 + CSW01_14465 0.51 +0.9
99,554 - CSW01_14465 0.54 -0.8
99,627 - CSW01_14465 0.62 +0.5
99,669 + CSW01_14465 0.67 +0.1
99,697 + CSW01_14465 0.70 -0.1
99,796 + CSW01_14465 0.81 -0.3
99,814 - CSW01_14465 0.83 -0.6
99,819 + CSW01_14465 0.83 -1.1
99,882 - +0.6
99,907 + -0.1
99,928 + +0.2
99,959 - -0.8
100,112 - -0.1
100,117 - -1.0
100,256 + CSW01_14470 0.20 -0.5
100,274 - CSW01_14470 0.26 -0.2
100,278 + CSW01_14470 0.27 -0.7
100,322 + CSW01_14470 0.42 -0.8
100,383 + CSW01_14470 0.63 -0.9
100,383 + CSW01_14470 0.63 +0.1
100,417 + CSW01_14470 0.74 +0.2
100,425 - CSW01_14470 0.77 -1.7
100,509 + -0.3
100,538 - +0.3
100,742 + CSW01_14475 0.12 -1.9
100,745 - CSW01_14475 0.13 +0.4
100,942 - CSW01_14475 0.44 -0.0
100,952 + CSW01_14475 0.46 +0.4

Or see this region's nucleotide sequence