Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_10970

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_aerobic_120MIN_ZN11A
2,335,937	-		CSW01_10960	0.49	-0.1
2,335,977	+		CSW01_10960	0.53	+1.1
2,335,996	+		CSW01_10960	0.56	+3.1
2,336,004	-		CSW01_10960	0.56	-0.6
2,336,017	-		CSW01_10960	0.58	+0.2
2,336,033	-		CSW01_10960	0.60	+1.2
2,336,052	-		CSW01_10960	0.62	+0.2
2,336,071	+		CSW01_10960	0.64	+0.0
2,336,071	+		CSW01_10960	0.64	+0.1
2,336,071	+		CSW01_10960	0.64	+0.3
2,336,071	+		CSW01_10960	0.64	+0.3
2,336,079	-		CSW01_10960	0.65	-0.5
2,336,079	-		CSW01_10960	0.65	-0.3
2,336,079	-		CSW01_10960	0.65	+0.5
2,336,079	-		CSW01_10960	0.65	+0.5
2,336,079	-		CSW01_10960	0.65	+1.9
2,336,079	-		CSW01_10960	0.65	+0.9
2,336,079	-		CSW01_10960	0.65	+0.5
2,336,079	-		CSW01_10960	0.65	+0.7
2,336,104	+		CSW01_10960	0.68	-0.2
2,336,122	+		CSW01_10960	0.70	-0.5
2,336,122	+		CSW01_10960	0.70	-0.0
2,336,155	+		CSW01_10960	0.73	+1.7
2,336,155	+		CSW01_10960	0.73	-0.9
2,336,160	+		CSW01_10960	0.74	+0.2
2,336,163	-		CSW01_10960	0.74	+1.1
2,336,167	+		CSW01_10960	0.75	+0.3
2,336,190	+		CSW01_10960	0.77	+0.2
2,336,198	-		CSW01_10960	0.78	+0.2
2,336,265	+		CSW01_10960	0.86	-0.6
2,336,298	+		CSW01_10960	0.89	-1.5
2,336,314	-				-0.3
2,336,326	-				+0.5
2,336,339	+				+1.6
2,336,352	-				+0.6
2,336,364	+				+0.4
2,336,364	+				+0.3
2,336,372	-				-0.8
2,336,372	-				-0.3
2,336,372	-				+0.9
2,336,372	-				+2.1
2,336,414	+				+0.8
2,336,414	+				-0.1
2,336,414	+				+0.2
2,336,422	-				+0.1
2,336,422	-				+2.4
2,336,509	-		CSW01_10965	0.22	+0.1
2,336,571	-		CSW01_10965	0.34	+1.4
2,336,602	+		CSW01_10965	0.39	-0.4
2,336,605	-		CSW01_10965	0.40	-0.1
2,336,671	-		CSW01_10965	0.53	+0.3
2,336,671	-		CSW01_10965	0.53	-0.9
2,336,671	-		CSW01_10965	0.53	+1.0
2,336,768	-		CSW01_10965	0.71	+0.6
2,336,821	-		CSW01_10965	0.81	+0.5
2,336,960	+				+0.3
2,336,960	+				-0.5
2,336,968	-				+1.3
2,337,021	+				-1.1
2,337,052	-				-0.9
2,337,058	-				-0.2
2,337,058	-				-0.4
2,337,085	+				+0.2
2,337,091	-				+0.1
2,337,117	+		CSW01_10970	0.11	+1.3
2,337,177	+		CSW01_10970	0.14	+0.6
2,337,187	+		CSW01_10970	0.14	+0.5
2,337,221	-		CSW01_10970	0.16	+0.2
2,337,225	+		CSW01_10970	0.16	+0.8
2,337,244	-		CSW01_10970	0.17	+0.4
2,337,246	+		CSW01_10970	0.18	+0.5
2,337,335	+		CSW01_10970	0.22	+0.0
2,337,343	-		CSW01_10970	0.23	-0.6
2,337,350	+		CSW01_10970	0.23	+0.1
2,337,363	-		CSW01_10970	0.24	+0.1
2,337,383	+		CSW01_10970	0.25	-0.2
2,337,398	-		CSW01_10970	0.26	+0.2
2,337,412	-		CSW01_10970	0.26	+0.6
2,337,417	-		CSW01_10970	0.27	+1.4
2,337,544	+		CSW01_10970	0.34	+0.5
2,337,544	+		CSW01_10970	0.34	+0.1
2,337,559	-		CSW01_10970	0.34	-0.5
2,337,559	-		CSW01_10970	0.34	+1.4
2,337,561	+		CSW01_10970	0.34	+0.2
2,337,597	+		CSW01_10970	0.36	+0.3
2,337,597	+		CSW01_10970	0.36	+0.2
2,337,597	+		CSW01_10970	0.36	-2.7
2,337,621	+		CSW01_10970	0.38	+0.4
2,337,621	+		CSW01_10970	0.38	+0.6
2,337,621	+		CSW01_10970	0.38	-0.3
2,337,631	+		CSW01_10970	0.38	+0.5
2,337,763	-		CSW01_10970	0.45	-0.5
2,337,795	-		CSW01_10970	0.47	+0.4
2,337,890	-		CSW01_10970	0.52	+0.1
2,337,894	+		CSW01_10970	0.52	+0.6
2,337,902	+		CSW01_10970	0.53	+1.4
2,337,939	+		CSW01_10970	0.55	+0.6
2,337,939	+		CSW01_10970	0.55	+2.5
2,337,939	+		CSW01_10970	0.55	-0.7
2,337,939	+		CSW01_10970	0.55	-0.6
2,337,947	-		CSW01_10970	0.55	+0.3
2,337,949	+		CSW01_10970	0.55	+0.7
2,338,000	-		CSW01_10970	0.58	+0.7
2,338,020	+		CSW01_10970	0.59	-0.6
2,338,066	-		CSW01_10970	0.62	-0.5
2,338,076	-		CSW01_10970	0.62	+2.1
2,338,238	+		CSW01_10970	0.71	+0.5
2,338,256	+		CSW01_10970	0.72	+0.4
2,338,256	+		CSW01_10970	0.72	-0.3
2,338,256	+		CSW01_10970	0.72	-0.2
2,338,283	+		CSW01_10970	0.73	-0.0
2,338,291	-		CSW01_10970	0.74	+0.8
2,338,308	+		CSW01_10970	0.75	+2.0
2,338,316	-		CSW01_10970	0.75	+0.4
2,338,319	+		CSW01_10970	0.75	+0.3
2,338,402	+		CSW01_10970	0.80	+0.1
2,338,404	-		CSW01_10970	0.80	+0.4
2,338,431	+		CSW01_10970	0.81	+0.1
2,338,472	-		CSW01_10970	0.83	+2.9
2,338,493	-		CSW01_10970	0.84	-0.4
2,338,508	+		CSW01_10970	0.85	+0.2
2,338,543	-		CSW01_10970	0.87	+0.3
2,338,553	+		CSW01_10970	0.88	-0.1
2,338,558	+		CSW01_10970	0.88	-1.7
2,338,558	+		CSW01_10970	0.88	+0.4
2,338,558	+		CSW01_10970	0.88	+0.2
2,338,566	-		CSW01_10970	0.88	+0.8
2,338,600	+				+1.2
2,338,673	+				+0.1
2,338,673	+				+0.2
2,338,673	+				-0.0
2,338,763	-				+1.6
2,338,789	+				-0.5
2,338,792	-				+0.7
2,338,831	+				+0.2
2,338,874	+		CSW01_10975	0.15	-0.1
2,338,882	+		CSW01_10975	0.16	-1.0
2,338,890	-		CSW01_10975	0.17	+0.6
2,338,890	-		CSW01_10975	0.17	+0.6
2,339,011	+		CSW01_10975	0.35	+1.0
2,339,020	-		CSW01_10975	0.37	+0.1
2,339,044	+		CSW01_10975	0.40	+0.1
2,339,075	+		CSW01_10975	0.45	-1.9
2,339,204	-		CSW01_10975	0.65	+0.0
2,339,258	-		CSW01_10975	0.73	+0.4
2,339,280	-		CSW01_10975	0.76	+1.3
2,339,280	-		CSW01_10975	0.76	-0.9
2,339,294	+		CSW01_10975	0.78	-1.2
2,339,333	-		CSW01_10975	0.84	-0.1
2,339,356	+		CSW01_10975	0.88	-1.1
2,339,356	+		CSW01_10975	0.88	+0.1
2,339,364	-		CSW01_10975	0.89	+0.5
2,339,397	-				+0.4
2,339,397	-				+0.4
2,339,512	-				+2.3
2,339,516	+				+0.0
2,339,516	+				-0.4
2,339,524	-				-0.9
2,339,531	+				-0.3
2,339,534	-				+0.1
2,339,598	+		CSW01_10980	0.14	-0.2
2,339,598	-		CSW01_10980	0.14	+0.3
2,339,665	+		CSW01_10980	0.19	-0.6
2,339,734	+		CSW01_10980	0.25	-0.0