Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04710

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04705 and CSW01_04710 are separated by 19 nucleotidesCSW01_04710 and CSW01_04715 overlap by 4 nucleotidesCSW01_04715 and CSW01_04720 overlap by 4 nucleotides CSW01_04705: CSW01_04705 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 978,196 to 979,314 _04705 CSW01_04710: CSW01_04710 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 979,334 to 980,575 _04710 CSW01_04715: CSW01_04715 - serine acetyltransferase, at 980,572 to 981,126 _04715 CSW01_04720: CSW01_04720 - glycosyl transferase family 1, at 981,123 to 982,271 _04720 Position (kb) 979 980 981Strain fitness (log2 ratio) -2 -1 0 1 2at 978.345 kb on + strand, within CSW01_04705at 978.374 kb on + strand, within CSW01_04705at 978.389 kb on + strand, within CSW01_04705at 978.411 kb on - strand, within CSW01_04705at 978.411 kb on - strand, within CSW01_04705at 978.439 kb on + strand, within CSW01_04705at 978.439 kb on + strand, within CSW01_04705at 978.447 kb on - strand, within CSW01_04705at 978.447 kb on - strand, within CSW01_04705at 978.456 kb on + strand, within CSW01_04705at 978.479 kb on + strand, within CSW01_04705at 978.546 kb on - strand, within CSW01_04705at 978.573 kb on - strand, within CSW01_04705at 978.579 kb on + strand, within CSW01_04705at 978.584 kb on + strand, within CSW01_04705at 978.592 kb on - strand, within CSW01_04705at 978.592 kb on - strand, within CSW01_04705at 978.592 kb on - strand, within CSW01_04705at 978.627 kb on + strand, within CSW01_04705at 978.627 kb on + strand, within CSW01_04705at 978.632 kb on + strand, within CSW01_04705at 978.635 kb on - strand, within CSW01_04705at 978.635 kb on - strand, within CSW01_04705at 978.650 kb on - strand, within CSW01_04705at 978.712 kb on - strand, within CSW01_04705at 978.725 kb on - strand, within CSW01_04705at 978.726 kb on + strand, within CSW01_04705at 978.840 kb on - strand, within CSW01_04705at 978.885 kb on + strand, within CSW01_04705at 978.888 kb on - strand, within CSW01_04705at 978.888 kb on - strand, within CSW01_04705at 978.888 kb on - strand, within CSW01_04705at 978.901 kb on - strand, within CSW01_04705at 978.906 kb on - strand, within CSW01_04705at 978.972 kb on + strand, within CSW01_04705at 978.972 kb on + strand, within CSW01_04705at 979.098 kb on + strand, within CSW01_04705at 979.098 kb on + strand, within CSW01_04705at 979.098 kb on + strand, within CSW01_04705at 979.098 kb on + strand, within CSW01_04705at 979.106 kb on - strand, within CSW01_04705at 979.106 kb on - strand, within CSW01_04705at 979.106 kb on - strand, within CSW01_04705at 979.208 kb on + strandat 979.208 kb on + strandat 979.208 kb on + strandat 979.209 kb on - strandat 979.209 kb on - strandat 979.209 kb on - strandat 979.216 kb on - strandat 979.216 kb on - strandat 979.224 kb on + strandat 979.224 kb on + strandat 979.272 kb on + strandat 979.272 kb on + strandat 979.273 kb on + strandat 979.281 kb on - strandat 979.318 kb on + strandat 979.323 kb on + strandat 979.371 kb on - strandat 979.391 kb on + strandat 979.399 kb on - strandat 979.422 kb on + strandat 979.422 kb on + strandat 979.430 kb on - strandat 979.471 kb on - strand, within CSW01_04710at 979.509 kb on + strand, within CSW01_04710at 979.509 kb on + strand, within CSW01_04710at 979.509 kb on + strand, within CSW01_04710at 979.509 kb on + strand, within CSW01_04710at 979.509 kb on + strand, within CSW01_04710at 979.517 kb on - strand, within CSW01_04710at 979.548 kb on - strand, within CSW01_04710at 979.632 kb on - strand, within CSW01_04710at 979.748 kb on + strand, within CSW01_04710at 979.756 kb on - strand, within CSW01_04710at 979.803 kb on + strand, within CSW01_04710at 979.803 kb on + strand, within CSW01_04710at 979.811 kb on - strand, within CSW01_04710at 979.847 kb on + strand, within CSW01_04710at 979.873 kb on + strand, within CSW01_04710at 979.896 kb on + strand, within CSW01_04710at 979.906 kb on + strand, within CSW01_04710at 979.906 kb on + strand, within CSW01_04710at 979.906 kb on + strand, within CSW01_04710at 979.914 kb on - strand, within CSW01_04710at 979.914 kb on - strand, within CSW01_04710at 979.914 kb on - strand, within CSW01_04710at 979.915 kb on - strand, within CSW01_04710at 980.020 kb on + strand, within CSW01_04710at 980.052 kb on + strand, within CSW01_04710at 980.057 kb on + strand, within CSW01_04710at 980.084 kb on - strand, within CSW01_04710at 980.125 kb on + strand, within CSW01_04710at 980.138 kb on - strand, within CSW01_04710at 980.180 kb on + strand, within CSW01_04710at 980.188 kb on - strand, within CSW01_04710at 980.198 kb on - strand, within CSW01_04710at 980.219 kb on + strand, within CSW01_04710at 980.288 kb on + strand, within CSW01_04710at 980.288 kb on + strand, within CSW01_04710at 980.333 kb on + strand, within CSW01_04710at 980.341 kb on - strand, within CSW01_04710at 980.341 kb on - strand, within CSW01_04710at 980.460 kb on + strandat 980.468 kb on - strandat 980.592 kb on + strandat 980.600 kb on - strandat 980.600 kb on - strandat 980.600 kb on - strandat 980.630 kb on + strand, within CSW01_04715at 980.630 kb on + strand, within CSW01_04715at 980.638 kb on - strand, within CSW01_04715at 980.638 kb on - strand, within CSW01_04715at 980.695 kb on - strand, within CSW01_04715at 980.803 kb on + strand, within CSW01_04715at 980.803 kb on + strand, within CSW01_04715at 980.811 kb on - strand, within CSW01_04715at 980.811 kb on - strand, within CSW01_04715at 980.887 kb on - strand, within CSW01_04715at 980.995 kb on + strand, within CSW01_04715at 981.003 kb on - strand, within CSW01_04715at 981.059 kb on - strand, within CSW01_04715at 981.089 kb on + strandat 981.125 kb on + strandat 981.223 kb on - strandat 981.236 kb on - strandat 981.262 kb on + strand, within CSW01_04720at 981.270 kb on - strand, within CSW01_04720at 981.284 kb on + strand, within CSW01_04720at 981.318 kb on + strand, within CSW01_04720at 981.365 kb on + strand, within CSW01_04720at 981.365 kb on + strand, within CSW01_04720at 981.440 kb on + strand, within CSW01_04720at 981.452 kb on - strand, within CSW01_04720at 981.454 kb on - strand, within CSW01_04720at 981.489 kb on + strand, within CSW01_04720at 981.489 kb on + strand, within CSW01_04720at 981.497 kb on - strand, within CSW01_04720

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11A
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978,345 + CSW01_04705 0.13 +1.6
978,374 + CSW01_04705 0.16 -0.1
978,389 + CSW01_04705 0.17 -0.2
978,411 - CSW01_04705 0.19 +0.8
978,411 - CSW01_04705 0.19 +0.3
978,439 + CSW01_04705 0.22 -0.3
978,439 + CSW01_04705 0.22 -0.2
978,447 - CSW01_04705 0.22 +0.3
978,447 - CSW01_04705 0.22 +0.2
978,456 + CSW01_04705 0.23 -1.5
978,479 + CSW01_04705 0.25 +0.5
978,546 - CSW01_04705 0.31 -0.7
978,573 - CSW01_04705 0.34 +0.6
978,579 + CSW01_04705 0.34 +0.3
978,584 + CSW01_04705 0.35 -0.3
978,592 - CSW01_04705 0.35 +0.3
978,592 - CSW01_04705 0.35 +0.1
978,592 - CSW01_04705 0.35 +0.6
978,627 + CSW01_04705 0.39 +0.6
978,627 + CSW01_04705 0.39 +0.6
978,632 + CSW01_04705 0.39 -1.1
978,635 - CSW01_04705 0.39 +0.7
978,635 - CSW01_04705 0.39 -0.2
978,650 - CSW01_04705 0.41 +0.4
978,712 - CSW01_04705 0.46 -1.3
978,725 - CSW01_04705 0.47 -0.0
978,726 + CSW01_04705 0.47 +0.2
978,840 - CSW01_04705 0.58 -0.9
978,885 + CSW01_04705 0.62 -0.4
978,888 - CSW01_04705 0.62 +0.2
978,888 - CSW01_04705 0.62 +0.3
978,888 - CSW01_04705 0.62 +0.2
978,901 - CSW01_04705 0.63 -0.1
978,906 - CSW01_04705 0.63 +0.1
978,972 + CSW01_04705 0.69 +0.6
978,972 + CSW01_04705 0.69 +0.6
979,098 + CSW01_04705 0.81 -0.3
979,098 + CSW01_04705 0.81 +0.5
979,098 + CSW01_04705 0.81 +0.2
979,098 + CSW01_04705 0.81 -0.1
979,106 - CSW01_04705 0.81 -0.1
979,106 - CSW01_04705 0.81 -0.2
979,106 - CSW01_04705 0.81 -0.1
979,208 + +0.1
979,208 + +1.3
979,208 + +0.6
979,209 - +1.1
979,209 - +0.9
979,209 - -0.7
979,216 - -0.9
979,216 - -0.6
979,224 + -0.5
979,224 + +0.5
979,272 + +0.5
979,272 + -0.4
979,273 + +0.5
979,281 - -0.3
979,318 + +0.2
979,323 + +1.4
979,371 - +0.7
979,391 + -0.7
979,399 - -0.9
979,422 + +0.6
979,422 + -0.2
979,430 - -0.2
979,471 - CSW01_04710 0.11 +0.5
979,509 + CSW01_04710 0.14 -0.1
979,509 + CSW01_04710 0.14 +1.0
979,509 + CSW01_04710 0.14 +0.3
979,509 + CSW01_04710 0.14 -0.1
979,509 + CSW01_04710 0.14 +0.0
979,517 - CSW01_04710 0.15 -0.1
979,548 - CSW01_04710 0.17 +0.6
979,632 - CSW01_04710 0.24 -0.5
979,748 + CSW01_04710 0.33 +0.8
979,756 - CSW01_04710 0.34 -0.3
979,803 + CSW01_04710 0.38 -0.0
979,803 + CSW01_04710 0.38 +1.3
979,811 - CSW01_04710 0.38 +0.3
979,847 + CSW01_04710 0.41 +0.3
979,873 + CSW01_04710 0.43 -0.1
979,896 + CSW01_04710 0.45 +0.3
979,906 + CSW01_04710 0.46 +1.5
979,906 + CSW01_04710 0.46 -0.4
979,906 + CSW01_04710 0.46 +0.6
979,914 - CSW01_04710 0.47 +0.5
979,914 - CSW01_04710 0.47 +0.9
979,914 - CSW01_04710 0.47 -0.7
979,915 - CSW01_04710 0.47 +0.5
980,020 + CSW01_04710 0.55 -0.5
980,052 + CSW01_04710 0.58 +1.6
980,057 + CSW01_04710 0.58 -1.2
980,084 - CSW01_04710 0.60 +0.4
980,125 + CSW01_04710 0.64 +0.1
980,138 - CSW01_04710 0.65 -1.0
980,180 + CSW01_04710 0.68 +0.6
980,188 - CSW01_04710 0.69 -0.1
980,198 - CSW01_04710 0.70 +0.8
980,219 + CSW01_04710 0.71 +0.0
980,288 + CSW01_04710 0.77 -0.4
980,288 + CSW01_04710 0.77 +0.6
980,333 + CSW01_04710 0.80 +0.6
980,341 - CSW01_04710 0.81 -0.4
980,341 - CSW01_04710 0.81 +0.1
980,460 + +0.6
980,468 - -0.6
980,592 + -2.1
980,600 - +1.1
980,600 - +0.1
980,600 - -0.5
980,630 + CSW01_04715 0.10 +0.8
980,630 + CSW01_04715 0.10 -0.1
980,638 - CSW01_04715 0.12 +0.6
980,638 - CSW01_04715 0.12 -0.0
980,695 - CSW01_04715 0.22 +0.0
980,803 + CSW01_04715 0.42 +0.3
980,803 + CSW01_04715 0.42 -0.1
980,811 - CSW01_04715 0.43 +0.0
980,811 - CSW01_04715 0.43 -0.3
980,887 - CSW01_04715 0.57 -0.5
980,995 + CSW01_04715 0.76 +1.0
981,003 - CSW01_04715 0.78 +1.3
981,059 - CSW01_04715 0.88 -1.1
981,089 + +2.6
981,125 + -0.6
981,223 - -0.2
981,236 - -0.5
981,262 + CSW01_04720 0.12 -0.2
981,270 - CSW01_04720 0.13 -0.0
981,284 + CSW01_04720 0.14 +2.6
981,318 + CSW01_04720 0.17 +1.0
981,365 + CSW01_04720 0.21 +0.3
981,365 + CSW01_04720 0.21 -0.3
981,440 + CSW01_04720 0.28 +0.3
981,452 - CSW01_04720 0.29 -0.1
981,454 - CSW01_04720 0.29 +0.9
981,489 + CSW01_04720 0.32 -0.3
981,489 + CSW01_04720 0.32 -0.0
981,497 - CSW01_04720 0.33 -0.2

Or see this region's nucleotide sequence