Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04170

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_04160 and CSW01_04165 are separated by 67 nucleotidesCSW01_04165 and CSW01_04170 overlap by 29 nucleotidesCSW01_04170 and CSW01_04175 are separated by 8 nucleotides CSW01_04160: CSW01_04160 - NAD(P)/FAD-dependent oxidoreductase, at 859,526 to 861,142 _04160 CSW01_04165: CSW01_04165 - MFS transporter, at 861,210 to 861,893 _04165 CSW01_04170: CSW01_04170 - hypothetical protein, at 861,865 to 862,017 _04170 CSW01_04175: CSW01_04175 - SWIM zinc finger domain-containing protein, at 862,026 to 863,795 _04175 Position (kb) 861 862 863Strain fitness (log2 ratio) -3 -2 -1 0 1at 861.013 kb on + strandat 861.020 kb on + strandat 861.022 kb on + strandat 861.049 kb on - strandat 861.049 kb on - strandat 861.057 kb on + strandat 861.121 kb on + strandat 861.177 kb on - strandat 861.177 kb on - strandat 861.262 kb on + strandat 861.327 kb on + strand, within CSW01_04165at 861.411 kb on + strand, within CSW01_04165at 861.454 kb on + strand, within CSW01_04165at 861.497 kb on - strand, within CSW01_04165at 861.511 kb on + strand, within CSW01_04165at 861.513 kb on + strand, within CSW01_04165at 861.516 kb on - strand, within CSW01_04165at 861.640 kb on + strand, within CSW01_04165at 861.761 kb on + strand, within CSW01_04165at 861.767 kb on + strand, within CSW01_04165at 861.792 kb on + strand, within CSW01_04165at 861.796 kb on + strand, within CSW01_04165at 861.858 kb on - strandat 861.860 kb on + strandat 861.868 kb on - strandat 861.948 kb on - strand, within CSW01_04170at 861.952 kb on - strand, within CSW01_04170at 861.973 kb on + strand, within CSW01_04170at 861.989 kb on + strand, within CSW01_04170at 861.997 kb on - strand, within CSW01_04170at 862.023 kb on + strandat 862.152 kb on - strandat 862.161 kb on - strandat 862.163 kb on + strandat 862.197 kb on - strandat 862.223 kb on + strand, within CSW01_04175at 862.244 kb on - strand, within CSW01_04175at 862.265 kb on - strand, within CSW01_04175at 862.279 kb on - strand, within CSW01_04175at 862.306 kb on + strand, within CSW01_04175at 862.321 kb on - strand, within CSW01_04175at 862.357 kb on - strand, within CSW01_04175at 862.376 kb on + strand, within CSW01_04175at 862.384 kb on - strand, within CSW01_04175at 862.384 kb on - strand, within CSW01_04175at 862.599 kb on - strand, within CSW01_04175at 862.630 kb on + strand, within CSW01_04175at 862.630 kb on + strand, within CSW01_04175at 862.630 kb on + strand, within CSW01_04175at 862.671 kb on + strand, within CSW01_04175at 862.714 kb on + strand, within CSW01_04175at 862.723 kb on - strand, within CSW01_04175at 862.728 kb on + strand, within CSW01_04175at 862.736 kb on - strand, within CSW01_04175at 862.736 kb on - strand, within CSW01_04175at 862.760 kb on + strand, within CSW01_04175at 862.760 kb on + strand, within CSW01_04175at 862.793 kb on + strand, within CSW01_04175at 862.880 kb on + strand, within CSW01_04175at 862.979 kb on - strand, within CSW01_04175at 862.991 kb on - strand, within CSW01_04175at 862.991 kb on - strand, within CSW01_04175

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11A
remove
861,013 + +0.3
861,020 + -0.2
861,022 + +0.8
861,049 - -1.0
861,049 - -0.1
861,057 + +0.6
861,121 + +0.1
861,177 - -0.0
861,177 - -0.1
861,262 + +0.0
861,327 + CSW01_04165 0.17 -0.4
861,411 + CSW01_04165 0.29 -0.1
861,454 + CSW01_04165 0.36 -1.2
861,497 - CSW01_04165 0.42 +0.5
861,511 + CSW01_04165 0.44 -0.4
861,513 + CSW01_04165 0.44 -0.0
861,516 - CSW01_04165 0.45 -0.1
861,640 + CSW01_04165 0.63 +0.5
861,761 + CSW01_04165 0.81 -0.2
861,767 + CSW01_04165 0.81 +0.3
861,792 + CSW01_04165 0.85 +0.5
861,796 + CSW01_04165 0.86 +0.2
861,858 - -0.1
861,860 + +0.5
861,868 - -0.3
861,948 - CSW01_04170 0.54 -0.6
861,952 - CSW01_04170 0.57 -0.3
861,973 + CSW01_04170 0.71 -0.3
861,989 + CSW01_04170 0.81 -0.4
861,997 - CSW01_04170 0.86 -0.2
862,023 + -1.1
862,152 - +0.1
862,161 - +0.4
862,163 + -0.7
862,197 - -0.5
862,223 + CSW01_04175 0.11 -0.0
862,244 - CSW01_04175 0.12 -0.3
862,265 - CSW01_04175 0.14 +0.2
862,279 - CSW01_04175 0.14 +0.3
862,306 + CSW01_04175 0.16 -0.3
862,321 - CSW01_04175 0.17 -3.7
862,357 - CSW01_04175 0.19 +0.2
862,376 + CSW01_04175 0.20 +0.5
862,384 - CSW01_04175 0.20 +0.0
862,384 - CSW01_04175 0.20 +1.3
862,599 - CSW01_04175 0.32 +0.6
862,630 + CSW01_04175 0.34 -0.6
862,630 + CSW01_04175 0.34 -0.1
862,630 + CSW01_04175 0.34 -0.1
862,671 + CSW01_04175 0.36 +0.4
862,714 + CSW01_04175 0.39 +1.7
862,723 - CSW01_04175 0.39 -1.0
862,728 + CSW01_04175 0.40 -0.5
862,736 - CSW01_04175 0.40 -0.6
862,736 - CSW01_04175 0.40 +0.3
862,760 + CSW01_04175 0.41 -0.5
862,760 + CSW01_04175 0.41 -1.0
862,793 + CSW01_04175 0.43 +0.3
862,880 + CSW01_04175 0.48 +1.4
862,979 - CSW01_04175 0.54 +0.6
862,991 - CSW01_04175 0.55 +0.3
862,991 - CSW01_04175 0.55 -0.2

Or see this region's nucleotide sequence