Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03945

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03940 and CSW01_03945 are separated by 25 nucleotidesCSW01_03945 and CSW01_03950 are separated by 36 nucleotidesCSW01_03950 and CSW01_03955 are separated by 12 nucleotides CSW01_03940: CSW01_03940 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 809,835 to 810,965 _03940 CSW01_03945: CSW01_03945 - histidine--tRNA ligase, at 810,991 to 812,259 _03945 CSW01_03950: CSW01_03950 - hypothetical protein, at 812,296 to 812,910 _03950 CSW01_03955: CSW01_03955 - outer membrane protein assembly factor BamB, at 812,923 to 814,083 _03955 Position (kb) 810 811 812 813Strain fitness (log2 ratio) -2 -1 0 1at 812.383 kb on + strand, within CSW01_03950at 812.417 kb on + strand, within CSW01_03950at 812.560 kb on + strand, within CSW01_03950at 812.703 kb on + strand, within CSW01_03950at 812.760 kb on + strand, within CSW01_03950at 812.784 kb on + strand, within CSW01_03950

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11A
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812,383 + CSW01_03950 0.14 -0.8
812,417 + CSW01_03950 0.20 -0.2
812,560 + CSW01_03950 0.43 -0.7
812,703 + CSW01_03950 0.66 -2.1
812,760 + CSW01_03950 0.75 -0.6
812,784 + CSW01_03950 0.79 +1.5

Or see this region's nucleotide sequence