Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03805

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_03795 and CSW01_03800 are separated by 33 nucleotidesCSW01_03800 and CSW01_03805 are separated by 60 nucleotidesCSW01_03805 and CSW01_03810 are separated by 202 nucleotides CSW01_03795: CSW01_03795 - phosphate ABC transporter ATP-binding protein, at 781,708 to 782,529 _03795 CSW01_03800: CSW01_03800 - phosphate transport system regulator PhoU, at 782,563 to 783,273 _03800 CSW01_03805: CSW01_03805 - polyphosphate kinase 2, at 783,334 to 784,110 _03805 CSW01_03810: CSW01_03810 - copper homeostasis protein CutC, at 784,313 to 785,077 _03810 Position (kb) 783 784 785Strain fitness (log2 ratio) -2 -1 0 1 2at 782.554 kb on + strandat 783.207 kb on + strandat 783.207 kb on + strandat 783.207 kb on + strandat 783.217 kb on - strandat 783.348 kb on + strandat 783.355 kb on + strandat 783.363 kb on - strandat 783.387 kb on - strandat 783.420 kb on - strand, within CSW01_03805at 783.441 kb on + strand, within CSW01_03805at 783.444 kb on - strand, within CSW01_03805at 783.446 kb on + strand, within CSW01_03805at 783.449 kb on - strand, within CSW01_03805at 783.469 kb on + strand, within CSW01_03805at 783.572 kb on + strand, within CSW01_03805at 783.580 kb on - strand, within CSW01_03805at 783.582 kb on + strand, within CSW01_03805at 783.585 kb on - strand, within CSW01_03805at 783.590 kb on - strand, within CSW01_03805at 783.637 kb on - strand, within CSW01_03805at 783.710 kb on - strand, within CSW01_03805at 783.717 kb on - strand, within CSW01_03805at 783.734 kb on + strand, within CSW01_03805at 783.787 kb on - strand, within CSW01_03805at 783.885 kb on - strand, within CSW01_03805at 784.005 kb on + strand, within CSW01_03805at 784.051 kb on - strandat 784.053 kb on + strandat 784.137 kb on - strandat 784.192 kb on + strandat 784.216 kb on - strandat 784.321 kb on + strandat 784.326 kb on + strandat 784.358 kb on + strandat 784.453 kb on + strand, within CSW01_03810at 784.489 kb on - strand, within CSW01_03810at 784.533 kb on - strand, within CSW01_03810at 784.550 kb on - strand, within CSW01_03810at 784.566 kb on - strand, within CSW01_03810at 784.568 kb on + strand, within CSW01_03810at 784.583 kb on + strand, within CSW01_03810at 784.616 kb on + strand, within CSW01_03810at 784.624 kb on - strand, within CSW01_03810at 784.629 kb on + strand, within CSW01_03810at 784.647 kb on - strand, within CSW01_03810at 784.663 kb on + strand, within CSW01_03810at 784.671 kb on - strand, within CSW01_03810at 784.671 kb on - strand, within CSW01_03810at 784.680 kb on + strand, within CSW01_03810at 784.680 kb on + strand, within CSW01_03810at 784.681 kb on + strand, within CSW01_03810at 784.693 kb on + strand, within CSW01_03810at 784.701 kb on - strand, within CSW01_03810at 784.725 kb on - strand, within CSW01_03810at 784.725 kb on - strand, within CSW01_03810at 784.725 kb on - strand, within CSW01_03810at 784.725 kb on - strand, within CSW01_03810at 784.753 kb on - strand, within CSW01_03810at 784.785 kb on + strand, within CSW01_03810at 784.796 kb on + strand, within CSW01_03810at 784.796 kb on + strand, within CSW01_03810at 784.796 kb on + strand, within CSW01_03810at 784.796 kb on + strand, within CSW01_03810at 784.804 kb on - strand, within CSW01_03810at 784.804 kb on - strand, within CSW01_03810at 784.804 kb on - strand, within CSW01_03810at 784.804 kb on - strand, within CSW01_03810at 784.804 kb on - strand, within CSW01_03810at 784.809 kb on + strand, within CSW01_03810at 784.859 kb on + strand, within CSW01_03810at 784.963 kb on + strand, within CSW01_03810at 784.978 kb on + strand, within CSW01_03810at 784.996 kb on + strand, within CSW01_03810at 785.004 kb on - strandat 785.033 kb on - strandat 785.088 kb on - strandat 785.088 kb on - strandat 785.088 kb on - strandat 785.088 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11A
remove
782,554 + +0.4
783,207 + +0.2
783,207 + +1.9
783,207 + -0.1
783,217 - +0.9
783,348 + +0.5
783,355 + -0.1
783,363 - -0.0
783,387 - +0.2
783,420 - CSW01_03805 0.11 +0.4
783,441 + CSW01_03805 0.14 -0.3
783,444 - CSW01_03805 0.14 -0.0
783,446 + CSW01_03805 0.14 +0.2
783,449 - CSW01_03805 0.15 -0.3
783,469 + CSW01_03805 0.17 -2.2
783,572 + CSW01_03805 0.31 +0.4
783,580 - CSW01_03805 0.32 -0.3
783,582 + CSW01_03805 0.32 +0.4
783,585 - CSW01_03805 0.32 +0.6
783,590 - CSW01_03805 0.33 -0.1
783,637 - CSW01_03805 0.39 +0.2
783,710 - CSW01_03805 0.48 +0.7
783,717 - CSW01_03805 0.49 +0.5
783,734 + CSW01_03805 0.51 +0.0
783,787 - CSW01_03805 0.58 +0.0
783,885 - CSW01_03805 0.71 +0.8
784,005 + CSW01_03805 0.86 -1.9
784,051 - +0.8
784,053 + -0.1
784,137 - +0.1
784,192 + +0.9
784,216 - -0.1
784,321 + -0.2
784,326 + +0.7
784,358 + -1.0
784,453 + CSW01_03810 0.18 +0.4
784,489 - CSW01_03810 0.23 +0.8
784,533 - CSW01_03810 0.29 -0.2
784,550 - CSW01_03810 0.31 -0.2
784,566 - CSW01_03810 0.33 +0.0
784,568 + CSW01_03810 0.33 +1.1
784,583 + CSW01_03810 0.35 -0.1
784,616 + CSW01_03810 0.40 +0.1
784,624 - CSW01_03810 0.41 +0.1
784,629 + CSW01_03810 0.41 +0.8
784,647 - CSW01_03810 0.44 -0.3
784,663 + CSW01_03810 0.46 +0.6
784,671 - CSW01_03810 0.47 +0.4
784,671 - CSW01_03810 0.47 -0.4
784,680 + CSW01_03810 0.48 +0.7
784,680 + CSW01_03810 0.48 +0.0
784,681 + CSW01_03810 0.48 +1.0
784,693 + CSW01_03810 0.50 +1.2
784,701 - CSW01_03810 0.51 +0.2
784,725 - CSW01_03810 0.54 -0.0
784,725 - CSW01_03810 0.54 -0.0
784,725 - CSW01_03810 0.54 +0.4
784,725 - CSW01_03810 0.54 +0.0
784,753 - CSW01_03810 0.58 +0.1
784,785 + CSW01_03810 0.62 +1.2
784,796 + CSW01_03810 0.63 +0.2
784,796 + CSW01_03810 0.63 -0.2
784,796 + CSW01_03810 0.63 +0.0
784,796 + CSW01_03810 0.63 -0.2
784,804 - CSW01_03810 0.64 +0.1
784,804 - CSW01_03810 0.64 -0.8
784,804 - CSW01_03810 0.64 -0.4
784,804 - CSW01_03810 0.64 +0.6
784,804 - CSW01_03810 0.64 -0.5
784,809 + CSW01_03810 0.65 +0.3
784,859 + CSW01_03810 0.71 +0.9
784,963 + CSW01_03810 0.85 +0.3
784,978 + CSW01_03810 0.87 +0.4
784,996 + CSW01_03810 0.89 +0.4
785,004 - +1.5
785,033 - -0.8
785,088 - +0.4
785,088 - +0.1
785,088 - -0.8
785,088 - -0.4

Or see this region's nucleotide sequence