Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03435

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03425 and CSW01_03430 are separated by 52 nucleotidesCSW01_03430 and CSW01_03435 are separated by 11 nucleotidesCSW01_03435 and CSW01_03440 are separated by 107 nucleotides CSW01_03425: CSW01_03425 - MATE family efflux transporter, at 692,698 to 694,035 _03425 CSW01_03430: CSW01_03430 - U32 family peptidase, at 694,088 to 694,966 _03430 CSW01_03435: CSW01_03435 - protease, at 694,978 to 695,991 _03435 CSW01_03440: CSW01_03440 - bifunctional diguanylate cyclase/phosphodiesterase, at 696,099 to 698,153 _03440 Position (kb) 694 695 696Strain fitness (log2 ratio) -2 -1 0 1 2 3at 693.984 kb on - strandat 694.068 kb on + strandat 694.111 kb on - strandat 694.131 kb on + strandat 694.131 kb on + strandat 694.200 kb on - strand, within CSW01_03430at 694.210 kb on + strand, within CSW01_03430at 694.210 kb on + strand, within CSW01_03430at 694.218 kb on - strand, within CSW01_03430at 694.218 kb on - strand, within CSW01_03430at 694.218 kb on - strand, within CSW01_03430at 694.294 kb on - strand, within CSW01_03430at 694.345 kb on - strand, within CSW01_03430at 694.428 kb on - strand, within CSW01_03430at 694.437 kb on + strand, within CSW01_03430at 694.484 kb on - strand, within CSW01_03430at 694.484 kb on - strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.513 kb on + strand, within CSW01_03430at 694.521 kb on + strand, within CSW01_03430at 694.521 kb on + strand, within CSW01_03430at 694.521 kb on - strand, within CSW01_03430at 694.521 kb on - strand, within CSW01_03430at 694.521 kb on - strand, within CSW01_03430at 694.521 kb on - strand, within CSW01_03430at 694.521 kb on - strand, within CSW01_03430at 694.521 kb on - strand, within CSW01_03430at 694.530 kb on + strand, within CSW01_03430at 694.591 kb on + strand, within CSW01_03430at 694.597 kb on - strand, within CSW01_03430at 694.599 kb on - strand, within CSW01_03430at 694.613 kb on - strand, within CSW01_03430at 694.622 kb on - strand, within CSW01_03430at 694.645 kb on + strand, within CSW01_03430at 694.692 kb on + strand, within CSW01_03430at 694.772 kb on - strand, within CSW01_03430at 694.818 kb on - strand, within CSW01_03430at 694.843 kb on + strand, within CSW01_03430at 694.969 kb on + strandat 695.011 kb on + strandat 695.043 kb on - strandat 695.068 kb on + strandat 695.068 kb on + strandat 695.076 kb on - strandat 695.136 kb on + strand, within CSW01_03435at 695.139 kb on - strand, within CSW01_03435at 695.201 kb on - strand, within CSW01_03435at 695.205 kb on + strand, within CSW01_03435at 695.269 kb on - strand, within CSW01_03435at 695.293 kb on - strand, within CSW01_03435at 695.295 kb on + strand, within CSW01_03435at 695.295 kb on + strand, within CSW01_03435at 695.295 kb on + strand, within CSW01_03435at 695.295 kb on + strand, within CSW01_03435at 695.295 kb on + strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.303 kb on - strand, within CSW01_03435at 695.413 kb on - strand, within CSW01_03435at 695.420 kb on + strand, within CSW01_03435at 695.626 kb on - strand, within CSW01_03435at 695.648 kb on + strand, within CSW01_03435at 695.656 kb on - strand, within CSW01_03435at 695.664 kb on + strand, within CSW01_03435at 695.669 kb on + strand, within CSW01_03435at 695.672 kb on - strand, within CSW01_03435at 695.674 kb on + strand, within CSW01_03435at 695.713 kb on + strand, within CSW01_03435at 695.993 kb on + strandat 695.993 kb on + strandat 695.993 kb on + strandat 696.001 kb on - strandat 696.001 kb on - strandat 696.037 kb on + strandat 696.038 kb on + strandat 696.046 kb on - strandat 696.209 kb on + strandat 696.260 kb on + strandat 696.387 kb on - strand, within CSW01_03440at 696.511 kb on - strand, within CSW01_03440at 696.595 kb on - strand, within CSW01_03440at 696.702 kb on + strand, within CSW01_03440at 696.736 kb on - strand, within CSW01_03440at 696.738 kb on + strand, within CSW01_03440at 696.746 kb on - strand, within CSW01_03440at 696.830 kb on + strand, within CSW01_03440at 696.830 kb on + strand, within CSW01_03440at 696.830 kb on + strand, within CSW01_03440at 696.838 kb on - strand, within CSW01_03440at 696.944 kb on + strand, within CSW01_03440at 696.949 kb on + strand, within CSW01_03440

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11A
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693,984 - -0.3
694,068 + -0.2
694,111 - +1.0
694,131 + +0.3
694,131 + +0.6
694,200 - CSW01_03430 0.13 -0.8
694,210 + CSW01_03430 0.14 +0.2
694,210 + CSW01_03430 0.14 +0.6
694,218 - CSW01_03430 0.15 +0.9
694,218 - CSW01_03430 0.15 -0.2
694,218 - CSW01_03430 0.15 +0.8
694,294 - CSW01_03430 0.23 -0.2
694,345 - CSW01_03430 0.29 +0.6
694,428 - CSW01_03430 0.39 +0.2
694,437 + CSW01_03430 0.40 +0.0
694,484 - CSW01_03430 0.45 -0.3
694,484 - CSW01_03430 0.45 +0.2
694,513 + CSW01_03430 0.48 +0.4
694,513 + CSW01_03430 0.48 -0.6
694,513 + CSW01_03430 0.48 +1.3
694,513 + CSW01_03430 0.48 +0.5
694,513 + CSW01_03430 0.48 -1.6
694,513 + CSW01_03430 0.48 +1.1
694,513 + CSW01_03430 0.48 +0.5
694,513 + CSW01_03430 0.48 +3.4
694,521 + CSW01_03430 0.49 -0.4
694,521 + CSW01_03430 0.49 +1.8
694,521 - CSW01_03430 0.49 -0.2
694,521 - CSW01_03430 0.49 +0.2
694,521 - CSW01_03430 0.49 +0.7
694,521 - CSW01_03430 0.49 +0.2
694,521 - CSW01_03430 0.49 -0.6
694,521 - CSW01_03430 0.49 -0.1
694,530 + CSW01_03430 0.50 +0.1
694,591 + CSW01_03430 0.57 -0.1
694,597 - CSW01_03430 0.58 -1.8
694,599 - CSW01_03430 0.58 +0.5
694,613 - CSW01_03430 0.60 +0.6
694,622 - CSW01_03430 0.61 -0.2
694,645 + CSW01_03430 0.63 +0.4
694,692 + CSW01_03430 0.69 -0.6
694,772 - CSW01_03430 0.78 -1.2
694,818 - CSW01_03430 0.83 +0.7
694,843 + CSW01_03430 0.86 +0.5
694,969 + -1.8
695,011 + -0.1
695,043 - -0.3
695,068 + +0.1
695,068 + -0.1
695,076 - -0.6
695,136 + CSW01_03435 0.16 +0.7
695,139 - CSW01_03435 0.16 +0.4
695,201 - CSW01_03435 0.22 +0.0
695,205 + CSW01_03435 0.22 -2.7
695,269 - CSW01_03435 0.29 -0.2
695,293 - CSW01_03435 0.31 -0.2
695,295 + CSW01_03435 0.31 -0.2
695,295 + CSW01_03435 0.31 +0.0
695,295 + CSW01_03435 0.31 +0.6
695,295 + CSW01_03435 0.31 +0.5
695,295 + CSW01_03435 0.31 -0.1
695,303 - CSW01_03435 0.32 -0.5
695,303 - CSW01_03435 0.32 -0.0
695,303 - CSW01_03435 0.32 -0.7
695,303 - CSW01_03435 0.32 -0.8
695,303 - CSW01_03435 0.32 -0.4
695,303 - CSW01_03435 0.32 +0.8
695,303 - CSW01_03435 0.32 -0.5
695,413 - CSW01_03435 0.43 +0.9
695,420 + CSW01_03435 0.44 -0.0
695,626 - CSW01_03435 0.64 +0.6
695,648 + CSW01_03435 0.66 -1.0
695,656 - CSW01_03435 0.67 -0.2
695,664 + CSW01_03435 0.68 +0.1
695,669 + CSW01_03435 0.68 +0.3
695,672 - CSW01_03435 0.68 -0.8
695,674 + CSW01_03435 0.69 +0.5
695,713 + CSW01_03435 0.72 -0.6
695,993 + -0.2
695,993 + +0.8
695,993 + -0.1
696,001 - +0.7
696,001 - +1.2
696,037 + -0.4
696,038 + -0.4
696,046 - -0.4
696,209 + +0.0
696,260 + -0.5
696,387 - CSW01_03440 0.14 -1.4
696,511 - CSW01_03440 0.20 +0.3
696,595 - CSW01_03440 0.24 -0.6
696,702 + CSW01_03440 0.29 -1.0
696,736 - CSW01_03440 0.31 +0.5
696,738 + CSW01_03440 0.31 +0.1
696,746 - CSW01_03440 0.31 +0.6
696,830 + CSW01_03440 0.36 +0.5
696,830 + CSW01_03440 0.36 -1.0
696,830 + CSW01_03440 0.36 +0.0
696,838 - CSW01_03440 0.36 -0.2
696,944 + CSW01_03440 0.41 +0.4
696,949 + CSW01_03440 0.41 +0.4

Or see this region's nucleotide sequence