Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03235

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03230 and CSW01_03235 overlap by 4 nucleotidesCSW01_03235 and CSW01_03240 overlap by 97 nucleotides CSW01_03230: CSW01_03230 - beta-N-acetylhexosaminidase, at 645,617 to 647,530 _03230 CSW01_03235: CSW01_03235 - N-acetylglucosamine kinase, at 647,527 to 648,504 _03235 CSW01_03240: CSW01_03240 - chitobiase, at 648,408 to 650,132 _03240 Position (kb) 647 648 649Strain fitness (log2 ratio) -2 -1 0 1 2at 646.544 kb on + strand, within CSW01_03230at 646.544 kb on + strand, within CSW01_03230at 646.544 kb on + strand, within CSW01_03230at 646.544 kb on + strand, within CSW01_03230at 646.552 kb on - strand, within CSW01_03230at 646.552 kb on - strand, within CSW01_03230at 646.552 kb on - strand, within CSW01_03230at 646.581 kb on + strand, within CSW01_03230at 646.668 kb on - strand, within CSW01_03230at 646.695 kb on + strand, within CSW01_03230at 646.695 kb on + strand, within CSW01_03230at 646.695 kb on + strand, within CSW01_03230at 646.695 kb on + strand, within CSW01_03230at 646.695 kb on + strand, within CSW01_03230at 646.695 kb on + strand, within CSW01_03230at 646.703 kb on - strand, within CSW01_03230at 646.705 kb on + strand, within CSW01_03230at 646.705 kb on + strand, within CSW01_03230at 646.711 kb on - strand, within CSW01_03230at 646.733 kb on + strand, within CSW01_03230at 646.776 kb on + strand, within CSW01_03230at 646.784 kb on - strand, within CSW01_03230at 646.784 kb on - strand, within CSW01_03230at 646.784 kb on - strand, within CSW01_03230at 646.786 kb on + strand, within CSW01_03230at 646.791 kb on - strand, within CSW01_03230at 646.802 kb on + strand, within CSW01_03230at 646.802 kb on + strand, within CSW01_03230at 646.810 kb on - strand, within CSW01_03230at 646.841 kb on + strand, within CSW01_03230at 646.849 kb on - strand, within CSW01_03230at 646.849 kb on - strand, within CSW01_03230at 646.883 kb on + strand, within CSW01_03230at 646.907 kb on + strand, within CSW01_03230at 646.970 kb on - strand, within CSW01_03230at 646.980 kb on - strand, within CSW01_03230at 647.002 kb on + strand, within CSW01_03230at 647.010 kb on - strand, within CSW01_03230at 647.015 kb on - strand, within CSW01_03230at 647.032 kb on + strand, within CSW01_03230at 647.115 kb on + strand, within CSW01_03230at 647.115 kb on + strand, within CSW01_03230at 647.123 kb on - strand, within CSW01_03230at 647.123 kb on - strand, within CSW01_03230at 647.123 kb on - strand, within CSW01_03230at 647.123 kb on - strand, within CSW01_03230at 647.137 kb on + strand, within CSW01_03230at 647.145 kb on - strand, within CSW01_03230at 647.145 kb on - strand, within CSW01_03230at 647.145 kb on - strand, within CSW01_03230at 647.179 kb on + strand, within CSW01_03230at 647.253 kb on - strand, within CSW01_03230at 647.318 kb on - strand, within CSW01_03230at 647.332 kb on - strand, within CSW01_03230at 647.346 kb on - strandat 647.371 kb on + strandat 647.389 kb on - strandat 647.396 kb on - strandat 647.401 kb on - strandat 647.402 kb on - strandat 647.402 kb on - strandat 647.440 kb on + strandat 647.459 kb on + strandat 647.496 kb on + strandat 647.545 kb on - strandat 647.561 kb on - strandat 647.580 kb on - strandat 647.580 kb on - strandat 647.620 kb on - strandat 647.627 kb on + strand, within CSW01_03235at 647.627 kb on + strand, within CSW01_03235at 647.630 kb on + strand, within CSW01_03235at 647.633 kb on - strand, within CSW01_03235at 647.638 kb on - strand, within CSW01_03235at 647.655 kb on + strand, within CSW01_03235at 647.655 kb on - strand, within CSW01_03235at 647.663 kb on - strand, within CSW01_03235at 647.690 kb on + strand, within CSW01_03235at 647.828 kb on + strand, within CSW01_03235at 647.828 kb on + strand, within CSW01_03235at 647.828 kb on + strand, within CSW01_03235at 647.828 kb on + strand, within CSW01_03235at 647.828 kb on + strand, within CSW01_03235at 647.836 kb on - strand, within CSW01_03235at 647.836 kb on - strand, within CSW01_03235at 647.882 kb on + strand, within CSW01_03235at 647.943 kb on + strand, within CSW01_03235at 647.950 kb on + strand, within CSW01_03235at 647.958 kb on - strand, within CSW01_03235at 647.968 kb on + strand, within CSW01_03235at 648.074 kb on + strand, within CSW01_03235at 648.128 kb on - strand, within CSW01_03235at 648.131 kb on + strand, within CSW01_03235at 648.131 kb on + strand, within CSW01_03235at 648.150 kb on + strand, within CSW01_03235at 648.187 kb on + strand, within CSW01_03235at 648.190 kb on - strand, within CSW01_03235at 648.238 kb on + strand, within CSW01_03235at 648.246 kb on - strand, within CSW01_03235at 648.288 kb on + strand, within CSW01_03235at 648.296 kb on - strand, within CSW01_03235at 648.296 kb on - strand, within CSW01_03235at 648.299 kb on + strand, within CSW01_03235at 648.307 kb on - strand, within CSW01_03235at 648.325 kb on + strand, within CSW01_03235at 648.336 kb on + strand, within CSW01_03235at 648.396 kb on - strand, within CSW01_03235at 648.431 kb on - strandat 648.502 kb on - strandat 648.541 kb on + strandat 648.594 kb on - strand, within CSW01_03240at 648.618 kb on + strand, within CSW01_03240at 648.648 kb on - strand, within CSW01_03240at 648.653 kb on - strand, within CSW01_03240at 648.675 kb on + strand, within CSW01_03240at 648.769 kb on + strand, within CSW01_03240at 648.837 kb on + strand, within CSW01_03240at 648.845 kb on - strand, within CSW01_03240at 648.845 kb on - strand, within CSW01_03240at 648.871 kb on + strand, within CSW01_03240at 648.880 kb on + strand, within CSW01_03240at 648.920 kb on + strand, within CSW01_03240at 648.975 kb on - strand, within CSW01_03240at 648.975 kb on - strand, within CSW01_03240at 648.988 kb on + strand, within CSW01_03240at 648.996 kb on - strand, within CSW01_03240at 649.080 kb on - strand, within CSW01_03240at 649.082 kb on + strand, within CSW01_03240at 649.087 kb on + strand, within CSW01_03240at 649.087 kb on + strand, within CSW01_03240at 649.087 kb on + strand, within CSW01_03240at 649.087 kb on + strand, within CSW01_03240at 649.087 kb on + strand, within CSW01_03240at 649.087 kb on + strand, within CSW01_03240at 649.095 kb on - strand, within CSW01_03240at 649.095 kb on - strand, within CSW01_03240at 649.095 kb on - strand, within CSW01_03240at 649.095 kb on - strand, within CSW01_03240at 649.129 kb on + strand, within CSW01_03240at 649.137 kb on - strand, within CSW01_03240at 649.146 kb on + strand, within CSW01_03240at 649.183 kb on - strand, within CSW01_03240at 649.203 kb on + strand, within CSW01_03240at 649.203 kb on + strand, within CSW01_03240at 649.211 kb on - strand, within CSW01_03240at 649.213 kb on + strand, within CSW01_03240at 649.213 kb on + strand, within CSW01_03240at 649.218 kb on + strand, within CSW01_03240at 649.218 kb on + strand, within CSW01_03240at 649.218 kb on + strand, within CSW01_03240at 649.218 kb on + strand, within CSW01_03240at 649.218 kb on + strand, within CSW01_03240at 649.226 kb on - strand, within CSW01_03240at 649.246 kb on + strand, within CSW01_03240at 649.263 kb on + strand, within CSW01_03240at 649.334 kb on + strand, within CSW01_03240at 649.377 kb on + strand, within CSW01_03240at 649.377 kb on + strand, within CSW01_03240at 649.385 kb on - strand, within CSW01_03240at 649.385 kb on - strand, within CSW01_03240at 649.385 kb on - strand, within CSW01_03240at 649.385 kb on - strand, within CSW01_03240at 649.444 kb on - strand, within CSW01_03240

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11A
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646,544 + CSW01_03230 0.48 -1.6
646,544 + CSW01_03230 0.48 -0.4
646,544 + CSW01_03230 0.48 +0.1
646,544 + CSW01_03230 0.48 +0.4
646,552 - CSW01_03230 0.49 +0.6
646,552 - CSW01_03230 0.49 +0.6
646,552 - CSW01_03230 0.49 -0.2
646,581 + CSW01_03230 0.50 +0.5
646,668 - CSW01_03230 0.55 +0.3
646,695 + CSW01_03230 0.56 -1.6
646,695 + CSW01_03230 0.56 +0.8
646,695 + CSW01_03230 0.56 +0.2
646,695 + CSW01_03230 0.56 +0.2
646,695 + CSW01_03230 0.56 +0.7
646,695 + CSW01_03230 0.56 +0.1
646,703 - CSW01_03230 0.57 +0.6
646,705 + CSW01_03230 0.57 -0.4
646,705 + CSW01_03230 0.57 -0.5
646,711 - CSW01_03230 0.57 -0.2
646,733 + CSW01_03230 0.58 -0.2
646,776 + CSW01_03230 0.61 +0.3
646,784 - CSW01_03230 0.61 -0.3
646,784 - CSW01_03230 0.61 -0.8
646,784 - CSW01_03230 0.61 +0.1
646,786 + CSW01_03230 0.61 -0.3
646,791 - CSW01_03230 0.61 +0.5
646,802 + CSW01_03230 0.62 +0.2
646,802 + CSW01_03230 0.62 +0.1
646,810 - CSW01_03230 0.62 -0.1
646,841 + CSW01_03230 0.64 +0.8
646,849 - CSW01_03230 0.64 +0.3
646,849 - CSW01_03230 0.64 +0.5
646,883 + CSW01_03230 0.66 -0.7
646,907 + CSW01_03230 0.67 -0.1
646,970 - CSW01_03230 0.71 +0.3
646,980 - CSW01_03230 0.71 +0.0
647,002 + CSW01_03230 0.72 -0.3
647,010 - CSW01_03230 0.73 +0.1
647,015 - CSW01_03230 0.73 +1.5
647,032 + CSW01_03230 0.74 +1.8
647,115 + CSW01_03230 0.78 -0.6
647,115 + CSW01_03230 0.78 -0.4
647,123 - CSW01_03230 0.79 -0.8
647,123 - CSW01_03230 0.79 +0.3
647,123 - CSW01_03230 0.79 +0.4
647,123 - CSW01_03230 0.79 -0.7
647,137 + CSW01_03230 0.79 -0.6
647,145 - CSW01_03230 0.80 +0.3
647,145 - CSW01_03230 0.80 +0.1
647,145 - CSW01_03230 0.80 +0.4
647,179 + CSW01_03230 0.82 +0.3
647,253 - CSW01_03230 0.85 +0.1
647,318 - CSW01_03230 0.89 +0.5
647,332 - CSW01_03230 0.90 +0.1
647,346 - +0.4
647,371 + +0.1
647,389 - +0.4
647,396 - -0.4
647,401 - +0.0
647,402 - +0.2
647,402 - +1.8
647,440 + +0.8
647,459 + -0.3
647,496 + -0.1
647,545 - +0.0
647,561 - -0.6
647,580 - -0.7
647,580 - +1.0
647,620 - -0.2
647,627 + CSW01_03235 0.10 +0.3
647,627 + CSW01_03235 0.10 -0.0
647,630 + CSW01_03235 0.11 +0.0
647,633 - CSW01_03235 0.11 +0.4
647,638 - CSW01_03235 0.11 +0.3
647,655 + CSW01_03235 0.13 -2.0
647,655 - CSW01_03235 0.13 +0.2
647,663 - CSW01_03235 0.14 +1.5
647,690 + CSW01_03235 0.17 -0.2
647,828 + CSW01_03235 0.31 +0.9
647,828 + CSW01_03235 0.31 -0.3
647,828 + CSW01_03235 0.31 -0.5
647,828 + CSW01_03235 0.31 -0.7
647,828 + CSW01_03235 0.31 +0.7
647,836 - CSW01_03235 0.32 +0.1
647,836 - CSW01_03235 0.32 +0.9
647,882 + CSW01_03235 0.36 +2.2
647,943 + CSW01_03235 0.43 +0.6
647,950 + CSW01_03235 0.43 -0.4
647,958 - CSW01_03235 0.44 +0.3
647,968 + CSW01_03235 0.45 +0.6
648,074 + CSW01_03235 0.56 +0.5
648,128 - CSW01_03235 0.61 -0.1
648,131 + CSW01_03235 0.62 -0.1
648,131 + CSW01_03235 0.62 -0.2
648,150 + CSW01_03235 0.64 +0.4
648,187 + CSW01_03235 0.67 +0.2
648,190 - CSW01_03235 0.68 +0.2
648,238 + CSW01_03235 0.73 +0.8
648,246 - CSW01_03235 0.74 +2.0
648,288 + CSW01_03235 0.78 -0.5
648,296 - CSW01_03235 0.79 -0.3
648,296 - CSW01_03235 0.79 -0.3
648,299 + CSW01_03235 0.79 -0.2
648,307 - CSW01_03235 0.80 +0.4
648,325 + CSW01_03235 0.82 -0.1
648,336 + CSW01_03235 0.83 -0.6
648,396 - CSW01_03235 0.89 +0.8
648,431 - +0.3
648,502 - -0.3
648,541 + -1.3
648,594 - CSW01_03240 0.11 +0.7
648,618 + CSW01_03240 0.12 +1.6
648,648 - CSW01_03240 0.14 -0.7
648,653 - CSW01_03240 0.14 +0.2
648,675 + CSW01_03240 0.15 +0.0
648,769 + CSW01_03240 0.21 +0.2
648,837 + CSW01_03240 0.25 -0.2
648,845 - CSW01_03240 0.25 +0.9
648,845 - CSW01_03240 0.25 -0.3
648,871 + CSW01_03240 0.27 +0.2
648,880 + CSW01_03240 0.27 -0.7
648,920 + CSW01_03240 0.30 -0.4
648,975 - CSW01_03240 0.33 +1.0
648,975 - CSW01_03240 0.33 -0.1
648,988 + CSW01_03240 0.34 +0.3
648,996 - CSW01_03240 0.34 -0.4
649,080 - CSW01_03240 0.39 +0.5
649,082 + CSW01_03240 0.39 -0.8
649,087 + CSW01_03240 0.39 +2.2
649,087 + CSW01_03240 0.39 +0.1
649,087 + CSW01_03240 0.39 -1.3
649,087 + CSW01_03240 0.39 -0.1
649,087 + CSW01_03240 0.39 -0.4
649,087 + CSW01_03240 0.39 +0.1
649,095 - CSW01_03240 0.40 +0.2
649,095 - CSW01_03240 0.40 -0.5
649,095 - CSW01_03240 0.40 +0.4
649,095 - CSW01_03240 0.40 -0.6
649,129 + CSW01_03240 0.42 +1.8
649,137 - CSW01_03240 0.42 +0.2
649,146 + CSW01_03240 0.43 +0.1
649,183 - CSW01_03240 0.45 +0.1
649,203 + CSW01_03240 0.46 +0.2
649,203 + CSW01_03240 0.46 +0.8
649,211 - CSW01_03240 0.47 +0.2
649,213 + CSW01_03240 0.47 -0.5
649,213 + CSW01_03240 0.47 +0.0
649,218 + CSW01_03240 0.47 +0.0
649,218 + CSW01_03240 0.47 -0.4
649,218 + CSW01_03240 0.47 -0.2
649,218 + CSW01_03240 0.47 -0.7
649,218 + CSW01_03240 0.47 +1.7
649,226 - CSW01_03240 0.47 -0.4
649,246 + CSW01_03240 0.49 -0.1
649,263 + CSW01_03240 0.50 -0.0
649,334 + CSW01_03240 0.54 +0.8
649,377 + CSW01_03240 0.56 +0.6
649,377 + CSW01_03240 0.56 +0.4
649,385 - CSW01_03240 0.57 +0.2
649,385 - CSW01_03240 0.57 -0.5
649,385 - CSW01_03240 0.57 -0.5
649,385 - CSW01_03240 0.57 -1.8
649,444 - CSW01_03240 0.60 +0.4

Or see this region's nucleotide sequence