Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02955

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02950 and CSW01_02955 are separated by 122 nucleotidesCSW01_02955 and CSW01_02960 overlap by 7 nucleotidesCSW01_02960 and CSW01_02965 are separated by 6 nucleotides CSW01_02950: CSW01_02950 - sodium ion-translocating decarboxylase subunit beta, at 583,190 to 584,320 _02950 CSW01_02955: CSW01_02955 - NADP-dependent oxidoreductase, at 584,443 to 585,393 _02955 CSW01_02960: CSW01_02960 - DedA family protein, at 585,387 to 585,848 _02960 CSW01_02965: CSW01_02965 - insulinase family protein, at 585,855 to 588,713 _02965 Position (kb) 584 585 586Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 583.508 kb on - strand, within CSW01_02950at 583.574 kb on - strand, within CSW01_02950at 583.574 kb on - strand, within CSW01_02950at 583.588 kb on + strand, within CSW01_02950at 583.683 kb on + strand, within CSW01_02950at 583.700 kb on + strand, within CSW01_02950at 583.700 kb on + strand, within CSW01_02950at 583.700 kb on + strand, within CSW01_02950at 583.700 kb on + strand, within CSW01_02950at 583.707 kb on + strand, within CSW01_02950at 583.708 kb on - strand, within CSW01_02950at 583.751 kb on + strand, within CSW01_02950at 583.800 kb on - strand, within CSW01_02950at 583.869 kb on + strand, within CSW01_02950at 583.877 kb on + strand, within CSW01_02950at 583.885 kb on - strand, within CSW01_02950at 583.996 kb on - strand, within CSW01_02950at 584.022 kb on - strand, within CSW01_02950at 584.077 kb on - strand, within CSW01_02950at 584.157 kb on - strand, within CSW01_02950at 584.176 kb on + strand, within CSW01_02950at 584.184 kb on - strand, within CSW01_02950at 584.184 kb on - strand, within CSW01_02950at 584.184 kb on - strand, within CSW01_02950at 584.184 kb on - strand, within CSW01_02950at 584.184 kb on - strand, within CSW01_02950at 584.184 kb on - strand, within CSW01_02950at 584.253 kb on + strandat 584.261 kb on - strandat 584.270 kb on + strandat 584.270 kb on + strandat 584.278 kb on - strandat 584.278 kb on - strandat 584.278 kb on - strandat 584.439 kb on - strandat 584.470 kb on - strandat 584.593 kb on + strand, within CSW01_02955at 584.593 kb on + strand, within CSW01_02955at 584.593 kb on + strand, within CSW01_02955at 584.601 kb on - strand, within CSW01_02955at 584.601 kb on - strand, within CSW01_02955at 584.601 kb on - strand, within CSW01_02955at 584.693 kb on + strand, within CSW01_02955at 584.693 kb on + strand, within CSW01_02955at 584.693 kb on + strand, within CSW01_02955at 584.693 kb on + strand, within CSW01_02955at 584.701 kb on - strand, within CSW01_02955at 584.706 kb on + strand, within CSW01_02955at 584.714 kb on - strand, within CSW01_02955at 584.768 kb on - strand, within CSW01_02955at 584.840 kb on - strand, within CSW01_02955at 584.854 kb on + strand, within CSW01_02955at 584.860 kb on + strand, within CSW01_02955at 584.868 kb on - strand, within CSW01_02955at 584.896 kb on + strand, within CSW01_02955at 584.926 kb on + strand, within CSW01_02955at 584.934 kb on - strand, within CSW01_02955at 584.976 kb on - strand, within CSW01_02955at 585.057 kb on + strand, within CSW01_02955at 585.149 kb on + strand, within CSW01_02955at 585.149 kb on + strand, within CSW01_02955at 585.180 kb on - strand, within CSW01_02955at 585.211 kb on + strand, within CSW01_02955at 585.231 kb on + strand, within CSW01_02955at 585.244 kb on - strand, within CSW01_02955at 585.246 kb on + strand, within CSW01_02955at 585.246 kb on + strand, within CSW01_02955at 585.254 kb on - strand, within CSW01_02955at 585.261 kb on + strand, within CSW01_02955at 585.261 kb on + strand, within CSW01_02955at 585.272 kb on + strand, within CSW01_02955at 585.272 kb on + strand, within CSW01_02955at 585.272 kb on + strand, within CSW01_02955at 585.303 kb on + strandat 585.313 kb on + strandat 585.313 kb on - strandat 585.313 kb on - strandat 585.315 kb on + strandat 585.321 kb on - strandat 585.321 kb on - strandat 585.321 kb on - strandat 585.323 kb on - strandat 585.323 kb on - strandat 585.331 kb on + strandat 585.332 kb on + strandat 585.332 kb on + strandat 585.340 kb on - strandat 585.350 kb on - strandat 585.419 kb on + strandat 585.444 kb on + strand, within CSW01_02960at 585.474 kb on - strand, within CSW01_02960at 585.476 kb on - strand, within CSW01_02960at 585.476 kb on - strand, within CSW01_02960at 585.507 kb on - strand, within CSW01_02960at 585.515 kb on + strand, within CSW01_02960at 585.523 kb on - strand, within CSW01_02960at 585.613 kb on + strand, within CSW01_02960at 585.665 kb on + strand, within CSW01_02960at 585.724 kb on - strand, within CSW01_02960at 585.731 kb on + strand, within CSW01_02960at 585.742 kb on - strand, within CSW01_02960at 585.744 kb on - strand, within CSW01_02960at 585.796 kb on + strand, within CSW01_02960at 585.804 kb on - strandat 585.806 kb on + strandat 585.814 kb on - strandat 585.830 kb on + strandat 585.830 kb on + strandat 585.830 kb on + strandat 585.838 kb on - strandat 585.838 kb on - strandat 585.838 kb on - strandat 585.838 kb on - strandat 585.838 kb on - strandat 585.838 kb on - strandat 585.842 kb on + strandat 585.850 kb on - strandat 585.850 kb on - strandat 585.850 kb on - strandat 585.935 kb on + strandat 585.974 kb on + strandat 585.997 kb on - strandat 586.024 kb on - strandat 586.168 kb on + strand, within CSW01_02965at 586.168 kb on + strand, within CSW01_02965at 586.168 kb on + strand, within CSW01_02965at 586.168 kb on + strand, within CSW01_02965at 586.176 kb on - strand, within CSW01_02965at 586.176 kb on - strand, within CSW01_02965at 586.176 kb on - strand, within CSW01_02965at 586.375 kb on - strand, within CSW01_02965

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11A
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583,508 - CSW01_02950 0.28 +0.9
583,574 - CSW01_02950 0.34 +1.3
583,574 - CSW01_02950 0.34 -2.7
583,588 + CSW01_02950 0.35 -0.0
583,683 + CSW01_02950 0.44 +0.3
583,700 + CSW01_02950 0.45 -0.1
583,700 + CSW01_02950 0.45 -0.1
583,700 + CSW01_02950 0.45 -0.1
583,700 + CSW01_02950 0.45 +0.7
583,707 + CSW01_02950 0.46 -0.2
583,708 - CSW01_02950 0.46 +1.0
583,751 + CSW01_02950 0.50 -0.1
583,800 - CSW01_02950 0.54 +0.1
583,869 + CSW01_02950 0.60 +1.1
583,877 + CSW01_02950 0.61 -0.1
583,885 - CSW01_02950 0.61 -0.3
583,996 - CSW01_02950 0.71 -1.6
584,022 - CSW01_02950 0.74 -1.0
584,077 - CSW01_02950 0.78 -0.5
584,157 - CSW01_02950 0.85 -0.1
584,176 + CSW01_02950 0.87 -0.2
584,184 - CSW01_02950 0.88 +2.0
584,184 - CSW01_02950 0.88 +0.3
584,184 - CSW01_02950 0.88 -1.3
584,184 - CSW01_02950 0.88 -0.3
584,184 - CSW01_02950 0.88 -0.7
584,184 - CSW01_02950 0.88 +0.1
584,253 + +0.3
584,261 - -1.2
584,270 + -0.0
584,270 + -0.6
584,278 - +0.2
584,278 - +0.0
584,278 - -2.1
584,439 - -0.9
584,470 - -0.2
584,593 + CSW01_02955 0.16 +0.7
584,593 + CSW01_02955 0.16 -0.3
584,593 + CSW01_02955 0.16 -0.2
584,601 - CSW01_02955 0.17 -0.1
584,601 - CSW01_02955 0.17 -0.3
584,601 - CSW01_02955 0.17 +0.1
584,693 + CSW01_02955 0.26 +0.5
584,693 + CSW01_02955 0.26 -0.5
584,693 + CSW01_02955 0.26 +0.4
584,693 + CSW01_02955 0.26 -0.3
584,701 - CSW01_02955 0.27 -0.2
584,706 + CSW01_02955 0.28 +0.7
584,714 - CSW01_02955 0.28 +0.1
584,768 - CSW01_02955 0.34 -0.2
584,840 - CSW01_02955 0.42 -0.3
584,854 + CSW01_02955 0.43 +0.1
584,860 + CSW01_02955 0.44 -1.4
584,868 - CSW01_02955 0.45 -0.2
584,896 + CSW01_02955 0.48 -0.5
584,926 + CSW01_02955 0.51 -0.1
584,934 - CSW01_02955 0.52 +0.1
584,976 - CSW01_02955 0.56 -0.0
585,057 + CSW01_02955 0.65 +0.7
585,149 + CSW01_02955 0.74 -0.1
585,149 + CSW01_02955 0.74 -2.1
585,180 - CSW01_02955 0.77 +0.0
585,211 + CSW01_02955 0.81 -1.3
585,231 + CSW01_02955 0.83 -0.6
585,244 - CSW01_02955 0.84 -0.7
585,246 + CSW01_02955 0.84 +0.6
585,246 + CSW01_02955 0.84 -2.4
585,254 - CSW01_02955 0.85 -0.0
585,261 + CSW01_02955 0.86 -0.5
585,261 + CSW01_02955 0.86 -0.2
585,272 + CSW01_02955 0.87 -0.6
585,272 + CSW01_02955 0.87 -0.4
585,272 + CSW01_02955 0.87 +0.7
585,303 + -1.0
585,313 + -0.7
585,313 - -0.8
585,313 - +0.2
585,315 + -0.6
585,321 - -0.3
585,321 - -0.7
585,321 - +0.1
585,323 - +0.3
585,323 - -0.7
585,331 + -0.9
585,332 + +0.5
585,332 + -0.6
585,340 - +0.5
585,350 - -0.1
585,419 + -0.0
585,444 + CSW01_02960 0.12 -0.3
585,474 - CSW01_02960 0.19 +0.5
585,476 - CSW01_02960 0.19 +0.6
585,476 - CSW01_02960 0.19 -0.9
585,507 - CSW01_02960 0.26 +0.5
585,515 + CSW01_02960 0.28 +0.1
585,523 - CSW01_02960 0.29 -0.7
585,613 + CSW01_02960 0.49 +1.4
585,665 + CSW01_02960 0.60 -0.0
585,724 - CSW01_02960 0.73 -0.1
585,731 + CSW01_02960 0.74 -1.5
585,742 - CSW01_02960 0.77 -0.4
585,744 - CSW01_02960 0.77 +0.3
585,796 + CSW01_02960 0.89 +0.3
585,804 - -1.3
585,806 + -3.0
585,814 - -0.2
585,830 + -0.1
585,830 + +0.1
585,830 + +0.4
585,838 - -0.4
585,838 - -0.1
585,838 - +0.6
585,838 - +0.6
585,838 - -0.2
585,838 - +0.3
585,842 + +0.7
585,850 - -0.7
585,850 - -0.7
585,850 - +0.1
585,935 + -0.3
585,974 + +0.8
585,997 - +0.2
586,024 - -0.2
586,168 + CSW01_02965 0.11 -0.0
586,168 + CSW01_02965 0.11 -0.9
586,168 + CSW01_02965 0.11 +1.1
586,168 + CSW01_02965 0.11 -1.2
586,176 - CSW01_02965 0.11 +0.1
586,176 - CSW01_02965 0.11 +0.1
586,176 - CSW01_02965 0.11 +0.4
586,375 - CSW01_02965 0.18 +0.5

Or see this region's nucleotide sequence