Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02830

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02820 and CSW01_02825 overlap by 8 nucleotidesCSW01_02825 and CSW01_02830 overlap by 1 nucleotidesCSW01_02830 and CSW01_02835 are separated by 73 nucleotides CSW01_02820: CSW01_02820 - 5'-nucleotidase SurE, at 561,054 to 561,845 _02820 CSW01_02825: CSW01_02825 - protein-L-isoaspartate O-methyltransferase, at 561,838 to 562,464 _02825 CSW01_02830: CSW01_02830 - murein hydrolase activator NlpD, at 562,464 to 563,399 _02830 CSW01_02835: CSW01_02835 - RNA polymerase sigma factor RpoS, at 563,473 to 564,480 _02835 Position (kb) 562 563 564Strain fitness (log2 ratio) -2 -1 0 1at 561.465 kb on - strand, within CSW01_02820at 561.525 kb on + strand, within CSW01_02820at 561.756 kb on + strand, within CSW01_02820at 561.770 kb on + strandat 561.778 kb on - strandat 561.894 kb on - strandat 561.960 kb on + strand, within CSW01_02825at 561.977 kb on + strand, within CSW01_02825at 561.987 kb on + strand, within CSW01_02825at 561.987 kb on + strand, within CSW01_02825at 561.994 kb on + strand, within CSW01_02825at 561.995 kb on + strand, within CSW01_02825at 562.000 kb on + strand, within CSW01_02825at 562.000 kb on + strand, within CSW01_02825at 562.002 kb on - strand, within CSW01_02825at 562.002 kb on - strand, within CSW01_02825at 562.003 kb on - strand, within CSW01_02825at 562.008 kb on - strand, within CSW01_02825at 562.008 kb on - strand, within CSW01_02825at 562.017 kb on + strand, within CSW01_02825at 562.025 kb on - strand, within CSW01_02825at 562.098 kb on - strand, within CSW01_02825at 562.142 kb on + strand, within CSW01_02825at 562.142 kb on + strand, within CSW01_02825at 562.152 kb on + strand, within CSW01_02825at 562.152 kb on + strand, within CSW01_02825at 562.160 kb on - strand, within CSW01_02825at 562.315 kb on - strand, within CSW01_02825at 562.334 kb on + strand, within CSW01_02825at 562.409 kb on - strandat 562.416 kb on + strandat 562.423 kb on + strandat 562.424 kb on - strandat 562.424 kb on - strandat 562.424 kb on - strandat 562.424 kb on - strandat 562.424 kb on - strandat 562.522 kb on + strandat 562.530 kb on - strandat 562.530 kb on - strandat 562.592 kb on + strand, within CSW01_02830at 562.633 kb on + strand, within CSW01_02830at 562.697 kb on + strand, within CSW01_02830at 562.705 kb on - strand, within CSW01_02830at 562.705 kb on - strand, within CSW01_02830at 562.714 kb on - strand, within CSW01_02830at 562.786 kb on - strand, within CSW01_02830at 562.962 kb on - strand, within CSW01_02830at 562.969 kb on - strand, within CSW01_02830at 563.012 kb on + strand, within CSW01_02830at 563.025 kb on + strand, within CSW01_02830at 563.060 kb on + strand, within CSW01_02830at 563.114 kb on - strand, within CSW01_02830at 563.114 kb on - strand, within CSW01_02830at 563.139 kb on + strand, within CSW01_02830at 563.142 kb on - strand, within CSW01_02830at 563.147 kb on - strand, within CSW01_02830at 563.168 kb on + strand, within CSW01_02830at 563.236 kb on - strand, within CSW01_02830at 563.292 kb on + strand, within CSW01_02830at 563.332 kb on + strandat 563.332 kb on - strandat 563.402 kb on - strandat 563.456 kb on + strandat 563.461 kb on - strandat 563.464 kb on - strandat 563.605 kb on - strand, within CSW01_02835at 563.616 kb on + strand, within CSW01_02835at 563.636 kb on + strand, within CSW01_02835at 563.636 kb on + strand, within CSW01_02835at 563.644 kb on - strand, within CSW01_02835at 563.706 kb on + strand, within CSW01_02835at 563.735 kb on - strand, within CSW01_02835at 563.821 kb on - strand, within CSW01_02835at 563.821 kb on - strand, within CSW01_02835at 563.823 kb on + strand, within CSW01_02835at 563.841 kb on + strand, within CSW01_02835at 563.848 kb on - strand, within CSW01_02835at 563.849 kb on - strand, within CSW01_02835at 563.859 kb on - strand, within CSW01_02835at 563.907 kb on - strand, within CSW01_02835at 563.969 kb on + strand, within CSW01_02835at 563.974 kb on - strand, within CSW01_02835at 564.026 kb on + strand, within CSW01_02835at 564.034 kb on - strand, within CSW01_02835at 564.034 kb on - strand, within CSW01_02835at 564.046 kb on - strand, within CSW01_02835at 564.124 kb on + strand, within CSW01_02835at 564.129 kb on + strand, within CSW01_02835at 564.137 kb on - strand, within CSW01_02835at 564.137 kb on - strand, within CSW01_02835at 564.159 kb on + strand, within CSW01_02835at 564.270 kb on + strand, within CSW01_02835at 564.283 kb on - strand, within CSW01_02835at 564.305 kb on + strand, within CSW01_02835at 564.305 kb on + strand, within CSW01_02835at 564.320 kb on + strand, within CSW01_02835at 564.320 kb on + strand, within CSW01_02835at 564.357 kb on + strand, within CSW01_02835

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11A
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561,465 - CSW01_02820 0.52 -0.5
561,525 + CSW01_02820 0.59 -0.4
561,756 + CSW01_02820 0.89 +0.2
561,770 + +0.0
561,778 - -0.6
561,894 - -0.0
561,960 + CSW01_02825 0.19 +0.3
561,977 + CSW01_02825 0.22 +0.6
561,987 + CSW01_02825 0.24 -0.3
561,987 + CSW01_02825 0.24 -0.0
561,994 + CSW01_02825 0.25 +0.3
561,995 + CSW01_02825 0.25 -0.3
562,000 + CSW01_02825 0.26 +0.1
562,000 + CSW01_02825 0.26 -0.3
562,002 - CSW01_02825 0.26 -0.9
562,002 - CSW01_02825 0.26 -1.2
562,003 - CSW01_02825 0.26 +0.5
562,008 - CSW01_02825 0.27 +0.1
562,008 - CSW01_02825 0.27 -0.9
562,017 + CSW01_02825 0.29 -0.3
562,025 - CSW01_02825 0.30 +0.3
562,098 - CSW01_02825 0.41 -0.4
562,142 + CSW01_02825 0.48 -2.2
562,142 + CSW01_02825 0.48 +0.1
562,152 + CSW01_02825 0.50 -0.4
562,152 + CSW01_02825 0.50 +0.6
562,160 - CSW01_02825 0.51 -1.1
562,315 - CSW01_02825 0.76 -0.6
562,334 + CSW01_02825 0.79 -0.6
562,409 - -0.0
562,416 + -0.4
562,423 + +0.1
562,424 - +0.3
562,424 - -0.2
562,424 - -1.4
562,424 - -0.8
562,424 - -0.5
562,522 + -0.5
562,530 - -0.5
562,530 - -0.1
562,592 + CSW01_02830 0.14 +0.0
562,633 + CSW01_02830 0.18 +0.6
562,697 + CSW01_02830 0.25 -0.4
562,705 - CSW01_02830 0.26 +1.1
562,705 - CSW01_02830 0.26 -0.6
562,714 - CSW01_02830 0.27 -1.5
562,786 - CSW01_02830 0.34 -0.1
562,962 - CSW01_02830 0.53 -0.3
562,969 - CSW01_02830 0.54 -0.7
563,012 + CSW01_02830 0.59 +0.1
563,025 + CSW01_02830 0.60 +0.4
563,060 + CSW01_02830 0.64 -1.1
563,114 - CSW01_02830 0.69 -0.1
563,114 - CSW01_02830 0.69 +0.8
563,139 + CSW01_02830 0.72 -0.9
563,142 - CSW01_02830 0.72 -0.8
563,147 - CSW01_02830 0.73 -0.9
563,168 + CSW01_02830 0.75 -0.9
563,236 - CSW01_02830 0.82 -0.2
563,292 + CSW01_02830 0.88 -0.1
563,332 + +0.2
563,332 - +0.2
563,402 - -0.1
563,456 + +0.6
563,461 - -1.5
563,464 - +0.6
563,605 - CSW01_02835 0.13 -0.7
563,616 + CSW01_02835 0.14 +0.4
563,636 + CSW01_02835 0.16 -0.3
563,636 + CSW01_02835 0.16 +0.4
563,644 - CSW01_02835 0.17 +0.1
563,706 + CSW01_02835 0.23 +0.5
563,735 - CSW01_02835 0.26 -0.2
563,821 - CSW01_02835 0.35 +0.2
563,821 - CSW01_02835 0.35 -0.2
563,823 + CSW01_02835 0.35 -0.2
563,841 + CSW01_02835 0.37 +0.7
563,848 - CSW01_02835 0.37 +0.0
563,849 - CSW01_02835 0.37 +0.0
563,859 - CSW01_02835 0.38 +1.0
563,907 - CSW01_02835 0.43 +0.1
563,969 + CSW01_02835 0.49 +0.6
563,974 - CSW01_02835 0.50 +0.2
564,026 + CSW01_02835 0.55 -0.5
564,034 - CSW01_02835 0.56 -0.7
564,034 - CSW01_02835 0.56 +0.4
564,046 - CSW01_02835 0.57 -0.5
564,124 + CSW01_02835 0.65 -0.0
564,129 + CSW01_02835 0.65 -1.1
564,137 - CSW01_02835 0.66 -1.0
564,137 - CSW01_02835 0.66 -0.3
564,159 + CSW01_02835 0.68 -0.1
564,270 + CSW01_02835 0.79 +0.4
564,283 - CSW01_02835 0.80 -0.1
564,305 + CSW01_02835 0.83 -0.0
564,305 + CSW01_02835 0.83 -0.3
564,320 + CSW01_02835 0.84 -0.2
564,320 + CSW01_02835 0.84 +0.4
564,357 + CSW01_02835 0.88 -1.4

Or see this region's nucleotide sequence