Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16660

Experiment: Carnitine Hydrochloride (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carnitine Hydrochloride (C)
3,757,135	+		AO356_16655	0.45	+1.3
3,757,135	+		AO356_16655	0.45	+1.1
3,757,135	+		AO356_16655	0.45	+0.0
3,757,136	-		AO356_16655	0.45	-0.6
3,757,136	-		AO356_16655	0.45	+0.7
3,757,420	+		AO356_16655	0.70	+0.6
3,757,420	+		AO356_16655	0.70	+0.3
3,757,421	-		AO356_16655	0.70	-0.2
3,757,421	-		AO356_16655	0.70	+0.3
3,757,421	-		AO356_16655	0.70	+0.7
3,757,421	-		AO356_16655	0.70	+0.1
3,757,421	-		AO356_16655	0.70	+0.7
3,757,421	-		AO356_16655	0.70	+0.1
3,757,421	-		AO356_16655	0.70	-0.3
3,757,561	+		AO356_16655	0.82	+1.1
3,757,561	+		AO356_16655	0.82	-0.5
3,757,561	+		AO356_16655	0.82	+1.1
3,757,561	+		AO356_16655	0.82	+0.4
3,757,561	+		AO356_16655	0.82	+0.4
3,757,562	-		AO356_16655	0.82	-0.8
3,757,606	+		AO356_16655	0.86	+0.9
3,757,606	+		AO356_16655	0.86	-0.1
3,757,606	+		AO356_16655	0.86	+0.8
3,757,710	+				+1.5
3,757,711	-				+0.7
3,757,770	+				+1.1
3,757,770	+				+0.5
3,757,770	+				+0.4
3,757,770	+				+0.4
3,757,770	+				-0.0
3,757,770	+				+0.2
3,757,770	+				+0.2
3,757,771	-				+0.4
3,757,771	-				-0.1
3,757,771	-				-1.5
3,757,781	+				-0.3
3,757,781	+				+1.1
3,757,781	+				-0.1
3,757,781	+				+0.0
3,757,781	+				+0.2
3,757,781	+				+2.1
3,757,782	-				+0.3
3,757,782	-				-0.4
3,757,782	-				+0.7
3,757,813	+				+0.3
3,757,813	+				-0.5
3,757,813	+				-0.4
3,757,826	+				+0.2
3,757,826	+				+0.5
3,757,826	+				+0.8
3,757,827	-				+0.6
3,757,827	-				-0.1
3,757,828	+				-0.1
3,757,828	+				+0.0
3,757,828	+				-0.3
3,757,828	+				+0.5
3,757,828	+				+0.5
3,757,828	+				+0.1
3,757,829	-				-0.5
3,757,829	-				+0.2
3,757,829	-				-1.8
3,757,829	-				-0.1
3,757,829	-				-2.1
3,757,829	-				-0.3
3,757,829	-				-0.8
3,757,829	-				+0.3
3,757,857	+				-1.6
3,757,858	-				+0.1
3,757,861	+				-0.8
3,757,861	+				+1.2
3,757,861	+				+1.1
3,757,861	+				+0.1
3,757,862	-				+0.3
3,757,862	-				+0.2
3,757,862	-				+0.4
3,757,872	+				+0.1
3,757,873	-				+0.0
3,757,943	-				+0.9
3,758,074	+		AO356_16660	0.26	+0.6
3,758,075	-		AO356_16660	0.27	+0.6
3,758,100	+		AO356_16660	0.30	+1.1
3,758,100	+		AO356_16660	0.30	-0.0
3,758,100	+		AO356_16660	0.30	-0.3
3,758,100	+		AO356_16660	0.30	+0.8
3,758,100	+		AO356_16660	0.30	-0.8
3,758,101	-		AO356_16660	0.30	-0.3
3,758,101	-		AO356_16660	0.30	-0.7
3,758,101	-		AO356_16660	0.30	-0.3
3,758,101	-		AO356_16660	0.30	-0.7
3,758,101	-		AO356_16660	0.30	+1.1
3,758,101	-		AO356_16660	0.30	+0.2
3,758,101	-		AO356_16660	0.30	-0.2
3,758,164	+		AO356_16660	0.38	+0.1
3,758,164	+		AO356_16660	0.38	-0.7
3,758,202	+		AO356_16660	0.43	+0.3
3,758,202	+		AO356_16660	0.43	+0.2
3,758,419	+		AO356_16660	0.72	+1.5
3,758,419	+		AO356_16660	0.72	+0.3
3,758,419	+		AO356_16660	0.72	+0.1
3,758,419	+		AO356_16660	0.72	+0.5
3,758,419	+		AO356_16660	0.72	+1.8
3,758,419	+		AO356_16660	0.72	-0.7
3,758,419	+		AO356_16660	0.72	+0.6
3,758,419	+		AO356_16660	0.72	+0.4
3,758,419	+		AO356_16660	0.72	-0.3
3,758,420	-		AO356_16660	0.72	+1.1
3,758,420	-		AO356_16660	0.72	-1.9
3,758,420	-		AO356_16660	0.72	+1.2
3,758,421	+		AO356_16660	0.72	+1.6
3,758,421	+		AO356_16660	0.72	+0.4
3,758,422	-		AO356_16660	0.72	-0.5
3,758,455	+		AO356_16660	0.77	+0.3
3,758,455	+		AO356_16660	0.77	+0.5
3,758,456	-		AO356_16660	0.77	+0.5
3,758,456	-		AO356_16660	0.77	+0.3
3,758,549	-		AO356_16660	0.89	+1.0
3,758,549	-		AO356_16660	0.89	+0.3
3,758,572	+				+0.4
3,758,573	-				-1.0
3,758,573	-				+0.4
3,758,637	+				-0.1
3,758,637	+				+0.8
3,758,637	+				-1.4
3,758,637	+				-0.1
3,758,637	+				+0.2
3,758,638	-				+0.3
3,758,638	-				-0.5
3,758,638	-				-1.5
3,758,638	-				+0.1
3,758,638	-				+0.6
3,758,638	-				+0.1
3,758,638	-				+0.0
3,758,638	-				-0.3
3,758,638	-				+0.1
3,758,638	-				-0.9
3,758,639	+				-0.9
3,758,639	+				-0.3
3,758,639	+				+0.7
3,758,640	-				+0.6
3,758,640	-				+0.3
3,758,703	+				-0.0
3,758,703	+				+0.1
3,758,704	-				-0.5
3,758,704	-				+0.5
3,758,704	-				+0.8
3,758,704	-				+0.3
3,758,704	-				+0.8
3,758,704	-				+0.2
3,758,704	-				-0.1
3,758,704	-				+0.8
3,758,704	-				-0.4
3,758,704	-				-0.2
3,758,711	+				+1.1
3,758,774	+				+0.6
3,758,805	+				+0.4
3,758,805	+				-0.5
3,758,806	-				-1.7
3,758,806	-				-1.4
3,758,823	+				-0.2
3,758,823	+				+0.5
3,758,823	+				+0.6
3,758,823	+				+1.2
3,758,824	-				-1.1
3,758,824	-				-0.7
3,758,824	-				-0.8
3,758,824	-				-1.7
3,758,824	-				-1.5
3,758,861	+				+0.6
3,758,862	-				+0.3
3,758,862	-				-1.4
3,758,880	-				-1.2
3,758,880	-				-0.5
3,758,980	+		AO356_16665	0.10	-2.3
3,758,980	+		AO356_16665	0.10	-0.8
3,758,980	+		AO356_16665	0.10	-0.7
3,758,980	+		AO356_16665	0.10	-1.9
3,758,980	+		AO356_16665	0.10	-0.4
3,758,980	+		AO356_16665	0.10	-0.9
3,758,981	-		AO356_16665	0.11	-1.3
3,758,981	-		AO356_16665	0.11	-2.3
3,758,992	-		AO356_16665	0.12	+0.7
3,759,097	+		AO356_16665	0.23	-2.2
3,759,098	-		AO356_16665	0.23	-0.1
3,759,098	-		AO356_16665	0.23	+0.6
3,759,256	+		AO356_16665	0.41	-1.3
3,759,256	+		AO356_16665	0.41	+0.0
3,759,256	+		AO356_16665	0.41	-1.0
3,759,257	-		AO356_16665	0.41	-1.2
3,759,257	-		AO356_16665	0.41	-0.8
3,759,257	-		AO356_16665	0.41	-1.1
3,759,257	-		AO356_16665	0.41	-1.3
3,759,257	-		AO356_16665	0.41	-1.3
3,759,325	+		AO356_16665	0.48	-2.1
3,759,325	+		AO356_16665	0.48	-0.8
3,759,391	+		AO356_16665	0.55	+0.0
3,759,391	+		AO356_16665	0.55	-0.8
3,759,392	-		AO356_16665	0.55	-0.0
3,759,469	+		AO356_16665	0.64	-0.7
3,759,469	+		AO356_16665	0.64	-0.4
3,759,469	+		AO356_16665	0.64	-0.1
3,759,470	-		AO356_16665	0.64	-1.1
3,759,470	-		AO356_16665	0.64	+0.8
3,759,470	-		AO356_16665	0.64	-0.5
3,759,470	-		AO356_16665	0.64	-1.8
3,759,475	+		AO356_16665	0.64	+0.5
3,759,475	+		AO356_16665	0.64	-2.2
3,759,475	+		AO356_16665	0.64	-2.7
3,759,475	+		AO356_16665	0.64	-0.7
3,759,475	+		AO356_16665	0.64	-1.5
3,759,475	+		AO356_16665	0.64	-0.6
3,759,475	+		AO356_16665	0.64	-1.3
3,759,476	-		AO356_16665	0.64	-0.7
3,759,476	-		AO356_16665	0.64	-0.7
3,759,476	-		AO356_16665	0.64	-2.5
3,759,476	-		AO356_16665	0.64	-2.6
3,759,476	-		AO356_16665	0.64	-2.0
3,759,506	-		AO356_16665	0.68	-2.8
3,759,506	-		AO356_16665	0.68	+0.9