Experiment: Carnitine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02680 and AO356_02685 are separated by 2 nucleotides AO356_02685 and AO356_02690 are separated by 271 nucleotides AO356_02690 and AO356_02695 overlap by 26 nucleotides AO356_02695 and AO356_02700 are separated by 3 nucleotides
AO356_02680: AO356_02680 - cell invasion protein SipB, at 588,325 to 590,094
_02680
AO356_02685: AO356_02685 - chaperone protein SicA, at 590,097 to 590,579
_02685
AO356_02690: AO356_02690 - type III secretion system protein SpaS, at 590,851 to 591,885
_02690
AO356_02695: AO356_02695 - type III secretion system protein SpaR, at 591,860 to 592,663
_02695
AO356_02700: AO356_02700 - type III secretion system protein SpaQ, at 592,667 to 592,921
_02700
Position (kb) 590
591
592 Strain fitness (log2 ratio) -2
-1
0
1 at 589.885 kb on + strand, within AO356_02680 at 589.885 kb on + strand, within AO356_02680 at 589.885 kb on + strand, within AO356_02680 at 589.885 kb on + strand, within AO356_02680 at 589.885 kb on + strand, within AO356_02680 at 589.886 kb on - strand, within AO356_02680 at 589.886 kb on - strand, within AO356_02680 at 589.886 kb on - strand, within AO356_02680 at 589.886 kb on - strand, within AO356_02680 at 589.934 kb on + strand at 589.934 kb on + strand at 589.935 kb on - strand at 589.935 kb on - strand at 590.083 kb on + strand at 590.084 kb on - strand at 590.084 kb on - strand at 590.143 kb on + strand at 590.143 kb on + strand at 590.143 kb on + strand at 590.144 kb on - strand at 590.194 kb on + strand, within AO356_02685 at 590.195 kb on - strand, within AO356_02685 at 590.195 kb on - strand, within AO356_02685 at 590.254 kb on + strand, within AO356_02685 at 590.255 kb on - strand, within AO356_02685 at 590.303 kb on - strand, within AO356_02685 at 590.377 kb on + strand, within AO356_02685 at 590.377 kb on + strand, within AO356_02685 at 590.378 kb on - strand, within AO356_02685 at 590.378 kb on - strand, within AO356_02685 at 590.386 kb on + strand, within AO356_02685 at 590.386 kb on + strand, within AO356_02685 at 590.386 kb on + strand, within AO356_02685 at 590.440 kb on + strand, within AO356_02685 at 590.440 kb on + strand, within AO356_02685 at 590.440 kb on + strand, within AO356_02685 at 590.440 kb on + strand, within AO356_02685 at 590.440 kb on + strand, within AO356_02685 at 590.461 kb on + strand, within AO356_02685 at 590.461 kb on + strand, within AO356_02685 at 590.461 kb on + strand, within AO356_02685 at 590.462 kb on - strand, within AO356_02685 at 590.710 kb on - strand at 591.003 kb on - strand, within AO356_02690 at 591.544 kb on + strand, within AO356_02690 at 591.545 kb on - strand, within AO356_02690 at 591.671 kb on + strand, within AO356_02690 at 591.672 kb on - strand, within AO356_02690 at 591.758 kb on + strand, within AO356_02690 at 591.758 kb on + strand, within AO356_02690 at 591.758 kb on + strand, within AO356_02690 at 591.758 kb on + strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.759 kb on - strand, within AO356_02690 at 591.975 kb on + strand, within AO356_02695 at 591.976 kb on - strand, within AO356_02695 at 591.976 kb on - strand, within AO356_02695 at 591.976 kb on - strand, within AO356_02695 at 592.203 kb on + strand, within AO356_02695 at 592.203 kb on + strand, within AO356_02695 at 592.494 kb on + strand, within AO356_02695 at 592.494 kb on + strand, within AO356_02695 at 592.668 kb on + strand at 592.885 kb on - strand, within AO356_02700 at 592.885 kb on - strand, within AO356_02700
Per-strain Table
Position Strand Gene LocusTag Fraction Carnitine Hydrochloride (C) remove 589,885 + AO356_02680 0.88 -0.3 589,885 + AO356_02680 0.88 +0.4 589,885 + AO356_02680 0.88 -0.6 589,885 + AO356_02680 0.88 +0.2 589,885 + AO356_02680 0.88 -0.9 589,886 - AO356_02680 0.88 -0.6 589,886 - AO356_02680 0.88 -0.8 589,886 - AO356_02680 0.88 +0.8 589,886 - AO356_02680 0.88 +0.4 589,934 + +0.4 589,934 + -0.8 589,935 - -0.5 589,935 - -0.6 590,083 + +0.0 590,084 - +0.2 590,084 - +1.0 590,143 + +0.1 590,143 + -0.1 590,143 + -0.2 590,144 - -1.0 590,194 + AO356_02685 0.20 +0.1 590,195 - AO356_02685 0.20 -0.3 590,195 - AO356_02685 0.20 -0.4 590,254 + AO356_02685 0.33 -0.3 590,255 - AO356_02685 0.33 -1.0 590,303 - AO356_02685 0.43 -2.0 590,377 + AO356_02685 0.58 -0.1 590,377 + AO356_02685 0.58 -0.3 590,378 - AO356_02685 0.58 +0.4 590,378 - AO356_02685 0.58 +1.0 590,386 + AO356_02685 0.60 -1.0 590,386 + AO356_02685 0.60 -0.4 590,386 + AO356_02685 0.60 +0.6 590,440 + AO356_02685 0.71 +0.1 590,440 + AO356_02685 0.71 +0.5 590,440 + AO356_02685 0.71 +0.6 590,440 + AO356_02685 0.71 -0.3 590,440 + AO356_02685 0.71 -0.1 590,461 + AO356_02685 0.75 +0.6 590,461 + AO356_02685 0.75 +1.1 590,461 + AO356_02685 0.75 +0.2 590,462 - AO356_02685 0.76 +0.7 590,710 - +0.7 591,003 - AO356_02690 0.15 +0.1 591,544 + AO356_02690 0.67 +0.3 591,545 - AO356_02690 0.67 -0.4 591,671 + AO356_02690 0.79 -0.4 591,672 - AO356_02690 0.79 -0.7 591,758 + AO356_02690 0.88 +0.8 591,758 + AO356_02690 0.88 -0.6 591,758 + AO356_02690 0.88 -2.0 591,758 + AO356_02690 0.88 +0.5 591,759 - AO356_02690 0.88 +0.5 591,759 - AO356_02690 0.88 -0.6 591,759 - AO356_02690 0.88 -1.3 591,759 - AO356_02690 0.88 +0.2 591,759 - AO356_02690 0.88 +0.3 591,759 - AO356_02690 0.88 -0.4 591,759 - AO356_02690 0.88 +0.0 591,975 + AO356_02695 0.14 -1.3 591,976 - AO356_02695 0.14 +0.3 591,976 - AO356_02695 0.14 -0.5 591,976 - AO356_02695 0.14 -0.3 592,203 + AO356_02695 0.43 -1.7 592,203 + AO356_02695 0.43 +1.2 592,494 + AO356_02695 0.79 -0.0 592,494 + AO356_02695 0.79 -0.2 592,668 + -0.9 592,885 - AO356_02700 0.85 +0.5 592,885 - AO356_02700 0.85 -0.3
Or see this region's nucleotide sequence