Strain Fitness in Shewanella loihica PV-4 around Shew_1007

Experiment: MinMedia 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1006 and Shew_1007 are separated by 297 nucleotidesShew_1007 and Shew_1008 are separated by 209 nucleotides Shew_1006: Shew_1006 - ErfK/YbiS/YcfS/YnhG family protein (RefSeq), at 1,163,002 to 1,163,943 _1006 Shew_1007: Shew_1007 - major outer membrane lipoprotein, putative (RefSeq), at 1,164,241 to 1,164,507 _1007 Shew_1008: Shew_1008 - metal dependent phosphohydrolase (RefSeq), at 1,164,717 to 1,165,958 _1008 Position (kb) 1164 1165Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1163.982 kb on - strandat 1164.079 kb on - strandat 1164.440 kb on - strand, within Shew_1007

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Per-strain Table

Position Strand Gene LocusTag Fraction MinMedia 30C
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1,163,982 - -0.1
1,164,079 - -0.1
1,164,440 - Shew_1007 0.75 -4.1

Or see this region's nucleotide sequence