Experiment: MinMedia 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt metH and Shew_0711 are separated by 329 nucleotides Shew_0711 and Shew_0712 are separated by 334 nucleotides
Shew_0710: metH - B12-dependent methionine synthase (RefSeq), at 807,370 to 811,092
metH
Shew_0711: Shew_0711 - phosphoglycerate mutase (RefSeq), at 811,422 to 812,033
_0711
Shew_0712: Shew_0712 - ABC transporter-related protein (RefSeq), at 812,368 to 813,342
_0712
Position (kb) 811
812
813 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 810.626 kb on - strand, within metH at 811.517 kb on - strand, within Shew_0711 at 811.548 kb on - strand, within Shew_0711 at 811.558 kb on - strand, within Shew_0711 at 811.686 kb on + strand, within Shew_0711 at 811.689 kb on - strand, within Shew_0711 at 811.691 kb on + strand, within Shew_0711 at 811.696 kb on + strand, within Shew_0711 at 812.181 kb on + strand at 812.197 kb on + strand at 812.564 kb on + strand, within Shew_0712 at 812.773 kb on - strand, within Shew_0712 at 812.868 kb on + strand, within Shew_0712 at 812.883 kb on + strand, within Shew_0712 at 813.006 kb on + strand, within Shew_0712 at 813.006 kb on + strand, within Shew_0712 at 813.006 kb on + strand, within Shew_0712 at 813.006 kb on + strand, within Shew_0712 at 813.014 kb on - strand, within Shew_0712 at 813.014 kb on - strand, within Shew_0712 at 813.014 kb on - strand, within Shew_0712
Per-strain Table
Position Strand Gene LocusTag Fraction MinMedia 30C remove 810,626 - metH Shew_0710 0.87 -6.6 811,517 - Shew_0711 0.16 +0.8 811,548 - Shew_0711 0.21 +1.0 811,558 - Shew_0711 0.22 +0.9 811,686 + Shew_0711 0.43 +1.0 811,689 - Shew_0711 0.44 +0.5 811,691 + Shew_0711 0.44 +1.3 811,696 + Shew_0711 0.45 +1.0 812,181 + -1.0 812,197 + -1.1 812,564 + Shew_0712 0.20 -3.6 812,773 - Shew_0712 0.42 -2.1 812,868 + Shew_0712 0.51 -6.8 812,883 + Shew_0712 0.53 -6.2 813,006 + Shew_0712 0.65 -6.3 813,006 + Shew_0712 0.65 -5.2 813,006 + Shew_0712 0.65 -6.1 813,006 + Shew_0712 0.65 -5.3 813,014 - Shew_0712 0.66 -6.3 813,014 - Shew_0712 0.66 -4.3 813,014 - Shew_0712 0.66 -4.2
Or see this region's nucleotide sequence