Experiment: Thymine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2863 and Dshi_2864 are separated by 2 nucleotides Dshi_2864 and Dshi_2865 are separated by 145 nucleotides Dshi_2865 and Dshi_2866 are separated by 16 nucleotides Dshi_2866 and Dshi_2867 are separated by 11 nucleotides
Dshi_2863: Dshi_2863 - hypothetical protein (RefSeq), at 3,019,899 to 3,020,720
_2863
Dshi_2864: Dshi_2864 - hypothetical protein (RefSeq), at 3,020,723 to 3,021,550
_2864
Dshi_2865: Dshi_2865 - succinate dehydrogenase, flavoprotein subunit (RefSeq), at 3,021,696 to 3,023,498
_2865
Dshi_2866: Dshi_2866 - Succinate dehydrogenase hydrophobic membrane anchor (RefSeq), at 3,023,515 to 3,023,886
_2866
Dshi_2867: Dshi_2867 - Succinate dehydrogenase cytochrome b556 subunit (RefSeq), at 3,023,898 to 3,024,281
_2867
Position (kb)
3021
3022
3023
3024 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3020.737 kb on - strand at 3020.747 kb on - strand at 3020.881 kb on + strand, within Dshi_2864 at 3020.966 kb on - strand, within Dshi_2864 at 3021.118 kb on + strand, within Dshi_2864 at 3021.223 kb on - strand, within Dshi_2864 at 3021.429 kb on + strand, within Dshi_2864 at 3021.439 kb on - strand, within Dshi_2864 at 3021.492 kb on - strand at 3021.559 kb on + strand at 3021.559 kb on + strand at 3021.570 kb on + strand at 3021.608 kb on + strand at 3021.613 kb on + strand at 3021.613 kb on + strand at 3021.647 kb on - strand at 3021.666 kb on - strand at 3021.667 kb on - strand at 3024.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine (N) remove 3,020,737 - +0.7 3,020,747 - -0.6 3,020,881 + Dshi_2864 0.19 -0.5 3,020,966 - Dshi_2864 0.29 -1.6 3,021,118 + Dshi_2864 0.48 +0.4 3,021,223 - Dshi_2864 0.60 -0.3 3,021,429 + Dshi_2864 0.85 -1.7 3,021,439 - Dshi_2864 0.86 -3.4 3,021,492 - -2.5 3,021,559 + -1.2 3,021,559 + -1.1 3,021,570 + -0.9 3,021,608 + -0.3 3,021,613 + -1.1 3,021,613 + +0.5 3,021,647 - -1.0 3,021,666 - -0.1 3,021,667 - -0.6 3,024,467 - -0.3
Or see this region's nucleotide sequence