Experiment: Thymine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2080 and Dshi_2081 are separated by 66 nucleotides Dshi_2081 and Dshi_2082 overlap by 4 nucleotides Dshi_2082 and Dshi_2083 are separated by 151 nucleotides Dshi_2083 and Dshi_2084 are separated by 90 nucleotides
Dshi_2080: Dshi_2080 - 5,10-methylenetetrahydrofolate reductase (RefSeq), at 2,200,594 to 2,201,463
_2080
Dshi_2081: Dshi_2081 - cytochrome c class I (RefSeq), at 2,201,530 to 2,202,114
_2081
Dshi_2082: Dshi_2082 - L-sorbosone dehydrogenase, putative (RefSeq), at 2,202,111 to 2,203,370
_2082
Dshi_2083: Dshi_2083 - thioesterase superfamily protein (RefSeq), at 2,203,522 to 2,203,989
_2083
Dshi_2084: Dshi_2084 - hypothetical protein (RefSeq), at 2,204,080 to 2,205,153
_2084
Position (kb)
2202
2203
2204 Strain fitness (log2 ratio)
-1
0
1 at 2201.514 kb on - strand at 2201.541 kb on + strand at 2201.665 kb on - strand, within Dshi_2081 at 2201.665 kb on - strand, within Dshi_2081 at 2201.763 kb on - strand, within Dshi_2081 at 2201.763 kb on - strand, within Dshi_2081 at 2201.909 kb on + strand, within Dshi_2081 at 2202.058 kb on - strand at 2202.138 kb on - strand at 2202.166 kb on + strand at 2202.341 kb on + strand, within Dshi_2082 at 2202.422 kb on + strand, within Dshi_2082 at 2202.451 kb on - strand, within Dshi_2082 at 2202.512 kb on - strand, within Dshi_2082 at 2202.530 kb on - strand, within Dshi_2082 at 2202.593 kb on - strand, within Dshi_2082 at 2202.606 kb on - strand, within Dshi_2082 at 2202.616 kb on + strand, within Dshi_2082 at 2202.706 kb on + strand, within Dshi_2082 at 2202.757 kb on - strand, within Dshi_2082 at 2202.830 kb on + strand, within Dshi_2082 at 2202.832 kb on - strand, within Dshi_2082 at 2202.969 kb on + strand, within Dshi_2082 at 2203.043 kb on - strand, within Dshi_2082 at 2203.086 kb on + strand, within Dshi_2082 at 2203.087 kb on + strand, within Dshi_2082 at 2203.130 kb on - strand, within Dshi_2082 at 2203.130 kb on - strand, within Dshi_2082 at 2203.225 kb on + strand, within Dshi_2082 at 2203.308 kb on - strand at 2203.323 kb on + strand at 2203.565 kb on - strand at 2203.675 kb on + strand, within Dshi_2083 at 2203.677 kb on + strand, within Dshi_2083 at 2203.683 kb on - strand, within Dshi_2083 at 2203.688 kb on + strand, within Dshi_2083 at 2203.711 kb on + strand, within Dshi_2083 at 2203.808 kb on - strand, within Dshi_2083 at 2203.895 kb on - strand, within Dshi_2083 at 2203.955 kb on - strand at 2203.978 kb on - strand at 2204.047 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine (N) remove 2,201,514 - -0.4 2,201,541 + -1.5 2,201,665 - Dshi_2081 0.23 -0.7 2,201,665 - Dshi_2081 0.23 +0.0 2,201,763 - Dshi_2081 0.40 -0.7 2,201,763 - Dshi_2081 0.40 -0.6 2,201,909 + Dshi_2081 0.65 -1.0 2,202,058 - -0.1 2,202,138 - -0.1 2,202,166 + -0.0 2,202,341 + Dshi_2082 0.18 +0.9 2,202,422 + Dshi_2082 0.25 -0.4 2,202,451 - Dshi_2082 0.27 +1.3 2,202,512 - Dshi_2082 0.32 -0.4 2,202,530 - Dshi_2082 0.33 -0.0 2,202,593 - Dshi_2082 0.38 -0.2 2,202,606 - Dshi_2082 0.39 -0.9 2,202,616 + Dshi_2082 0.40 +0.3 2,202,706 + Dshi_2082 0.47 +1.0 2,202,757 - Dshi_2082 0.51 -1.5 2,202,830 + Dshi_2082 0.57 -0.4 2,202,832 - Dshi_2082 0.57 -0.7 2,202,969 + Dshi_2082 0.68 +1.0 2,203,043 - Dshi_2082 0.74 +0.7 2,203,086 + Dshi_2082 0.77 -0.1 2,203,087 + Dshi_2082 0.77 +0.9 2,203,130 - Dshi_2082 0.81 -0.2 2,203,130 - Dshi_2082 0.81 -0.2 2,203,225 + Dshi_2082 0.88 +1.0 2,203,308 - +0.8 2,203,323 + +0.0 2,203,565 - +0.0 2,203,675 + Dshi_2083 0.33 -0.4 2,203,677 + Dshi_2083 0.33 +0.8 2,203,683 - Dshi_2083 0.34 +0.2 2,203,688 + Dshi_2083 0.35 -0.8 2,203,711 + Dshi_2083 0.40 +1.3 2,203,808 - Dshi_2083 0.61 +0.1 2,203,895 - Dshi_2083 0.80 +1.2 2,203,955 - +0.2 2,203,978 - +0.9 2,204,047 + -0.3
Or see this region's nucleotide sequence