Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1862

Experiment: Thymine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Thymine (N)
1,939,854	+				-0.7
1,939,884	-				+0.0
1,939,899	+				+1.5
1,939,914	+				+0.1
1,939,914	-				-1.2
1,939,916	+				+0.5
1,939,928	+				-0.4
1,939,996	+				-0.9
1,940,062	+				+0.9
1,940,062	+				-0.3
1,940,070	-				+0.1
1,940,098	-		Dshi_1861	0.11	-0.5
1,940,112	+		Dshi_1861	0.13	+0.4
1,940,112	+		Dshi_1861	0.13	-0.3
1,940,112	+		Dshi_1861	0.13	-0.9
1,940,119	+		Dshi_1861	0.14	+0.2
1,940,130	+		Dshi_1861	0.16	-0.2
1,940,135	+		Dshi_1861	0.17	+1.2
1,940,140	+		Dshi_1861	0.17	-0.2
1,940,162	+		Dshi_1861	0.21	-0.3
1,940,188	+		Dshi_1861	0.24	+0.3
1,940,234	-		Dshi_1861	0.31	+0.1
1,940,276	+		Dshi_1861	0.37	-0.3
1,940,315	+		Dshi_1861	0.43	+0.6
1,940,320	+		Dshi_1861	0.43	-1.9
1,940,322	+		Dshi_1861	0.44	+0.2
1,940,325	+		Dshi_1861	0.44	-1.3
1,940,335	+		Dshi_1861	0.46	-0.5
1,940,367	+		Dshi_1861	0.50	-0.4
1,940,392	+		Dshi_1861	0.54	-0.0
1,940,397	+		Dshi_1861	0.55	+0.5
1,940,400	-		Dshi_1861	0.55	+0.1
1,940,404	+		Dshi_1861	0.56	-0.2
1,940,406	+		Dshi_1861	0.56	-0.3
1,940,406	+		Dshi_1861	0.56	+0.9
1,940,406	+		Dshi_1861	0.56	-0.2
1,940,414	-		Dshi_1861	0.57	-0.6
1,940,414	-		Dshi_1861	0.57	+0.4
1,940,421	+		Dshi_1861	0.58	-0.9
1,940,432	+		Dshi_1861	0.60	+0.5
1,940,434	+		Dshi_1861	0.60	-0.7
1,940,434	+		Dshi_1861	0.60	-0.1
1,940,442	-		Dshi_1861	0.61	-1.8
1,940,442	-		Dshi_1861	0.61	-1.4
1,940,455	+		Dshi_1861	0.63	-0.1
1,940,472	-		Dshi_1861	0.66	+0.7
1,940,481	+		Dshi_1861	0.67	+0.8
1,940,481	+		Dshi_1861	0.67	+1.1
1,940,481	+		Dshi_1861	0.67	-0.6
1,940,481	+		Dshi_1861	0.67	+0.7
1,940,481	+		Dshi_1861	0.67	-2.6
1,940,481	+		Dshi_1861	0.67	+0.3
1,940,481	+		Dshi_1861	0.67	+0.3
1,940,481	+		Dshi_1861	0.67	-0.3
1,940,481	+		Dshi_1861	0.67	-0.1
1,940,489	-		Dshi_1861	0.68	-0.2
1,940,489	-		Dshi_1861	0.68	+1.9
1,940,489	-		Dshi_1861	0.68	-0.7
1,940,489	-		Dshi_1861	0.68	-0.7
1,940,489	-		Dshi_1861	0.68	-0.3
1,940,489	-		Dshi_1861	0.68	+0.2
1,940,489	-		Dshi_1861	0.68	-0.7
1,940,495	+		Dshi_1861	0.69	-0.1
1,940,495	+		Dshi_1861	0.69	-0.5
1,940,497	+		Dshi_1861	0.69	+0.6
1,940,503	-		Dshi_1861	0.70	-0.3
1,940,503	-		Dshi_1861	0.70	-0.9
1,940,505	-		Dshi_1861	0.70	-3.1
1,940,505	-		Dshi_1861	0.70	+1.4
1,940,505	-		Dshi_1861	0.70	-0.1
1,940,505	-		Dshi_1861	0.70	+0.1
1,940,505	-		Dshi_1861	0.70	-1.8
1,940,505	-		Dshi_1861	0.70	+0.3
1,940,505	-		Dshi_1861	0.70	-0.5
1,940,511	+		Dshi_1861	0.71	+0.4
1,940,512	+		Dshi_1861	0.71	+0.1
1,940,512	+		Dshi_1861	0.71	+0.2
1,940,512	+		Dshi_1861	0.71	-0.2
1,940,512	+		Dshi_1861	0.71	-0.5
1,940,512	+		Dshi_1861	0.71	-0.0
1,940,512	+		Dshi_1861	0.71	+0.5
1,940,512	+		Dshi_1861	0.71	-0.4
1,940,512	+		Dshi_1861	0.71	-2.1
1,940,512	+		Dshi_1861	0.71	-0.2
1,940,512	+		Dshi_1861	0.71	+0.1
1,940,520	-		Dshi_1861	0.72	-0.1
1,940,520	-		Dshi_1861	0.72	+1.0
1,940,520	-		Dshi_1861	0.72	-0.4
1,940,520	-		Dshi_1861	0.72	+0.5
1,940,520	-		Dshi_1861	0.72	-1.4
1,940,520	-		Dshi_1861	0.72	+0.5
1,940,520	-		Dshi_1861	0.72	-0.7
1,940,520	-		Dshi_1861	0.72	-0.8
1,940,520	-		Dshi_1861	0.72	+0.1
1,940,520	-		Dshi_1861	0.72	+1.1
1,940,520	-		Dshi_1861	0.72	-0.1
1,940,535	-		Dshi_1861	0.75	-0.0
1,940,598	+		Dshi_1861	0.84	+0.4
1,940,598	+		Dshi_1861	0.84	-0.2
1,940,600	+		Dshi_1861	0.84	-1.4
1,940,600	+		Dshi_1861	0.84	-1.4
1,940,600	+		Dshi_1861	0.84	-1.4
1,940,600	+		Dshi_1861	0.84	-0.0
1,940,602	+		Dshi_1861	0.84	+0.3
1,940,608	-		Dshi_1861	0.85	-0.8
1,940,608	-		Dshi_1861	0.85	-0.6
1,940,608	-		Dshi_1861	0.85	+0.6
1,940,608	-		Dshi_1861	0.85	-0.9
1,940,608	-		Dshi_1861	0.85	-0.0
1,940,608	-		Dshi_1861	0.85	+0.8
1,940,608	-		Dshi_1861	0.85	-1.4
1,940,608	-		Dshi_1861	0.85	-0.5
1,940,608	-		Dshi_1861	0.85	+1.4
1,940,608	-		Dshi_1861	0.85	+0.5
1,940,608	-		Dshi_1861	0.85	+1.6
1,940,627	+		Dshi_1861	0.88	-0.5
1,940,642	-				+0.0
1,940,644	-				-0.8
1,940,644	-				-0.9
1,940,644	-				-0.4
1,940,648	+				-0.1
1,940,661	+				+1.3
1,940,687	+				-1.4
1,940,689	+				-0.4
1,940,694	+				+0.2
1,940,695	-				-0.3
1,940,695	-				+0.8
1,940,695	-				-0.1
1,940,702	-				-0.0
1,940,876	-		Dshi_1862	0.23	-0.2
1,940,903	+		Dshi_1862	0.32	-0.1
1,941,095	+				-1.4
1,941,095	+				-2.2
1,941,103	-				+0.8
1,941,110	+				+0.1
1,941,110	+				+0.6
1,941,110	+				-1.9
1,941,110	+				-0.5
1,941,110	+				-0.4
1,941,117	+				-0.9
1,941,118	-				+0.8
1,941,118	-				-0.3
1,941,118	-				+0.6
1,941,118	-				+0.3
1,941,125	-				-0.7
1,941,127	+				-0.9
1,941,142	-				+0.8
1,941,149	+				-0.1
1,941,149	+				+0.1
1,941,149	+				-0.0
1,941,149	+				-0.6
1,941,149	-				-0.2
1,941,151	+				-0.8
1,941,173	+				-1.2
1,941,188	-				+0.2
1,941,204	+				+0.1
1,941,234	+				+0.5
1,941,236	+				-1.5
1,941,236	+				-0.2
1,941,236	+				-0.2
1,941,242	-				+0.3
1,941,242	-				-0.9
1,941,243	-				-0.3
1,941,244	-				-0.3
1,941,251	+				+0.1
1,941,259	-				+0.5
1,941,267	+				+0.4
1,941,272	+				-0.1
1,941,279	-				+0.2
1,941,290	+				-0.2
1,941,291	+				-1.0
1,941,291	+				+0.5
1,941,291	+				-1.9
1,941,291	+				-0.2
1,941,291	+				-0.4
1,941,291	+				-0.1
1,941,291	+				-0.8
1,941,297	-				-0.8
1,941,299	-				-0.7
1,941,299	-				-1.7
1,941,299	-				-0.4
1,941,299	-				-0.2
1,941,299	-				+0.1
1,941,299	-				-0.2
1,941,299	-				-0.1
1,941,299	-				-0.6
1,941,299	-				-0.7
1,941,299	-				-0.1
1,941,299	-				-3.6
1,941,299	-				-1.2
1,941,299	-				-0.8
1,941,299	-				-0.2
1,941,299	-				-1.4
1,941,299	-				-0.5
1,941,299	-				-0.3
1,941,312	+				-0.3
1,941,312	-				-1.8
1,941,315	+				-0.2
1,941,325	+				-0.7
1,941,333	-				-2.9
1,941,333	-				+0.3
1,941,335	+				-0.4
1,941,343	-				+0.5
1,941,345	-				-0.6
1,941,356	+				-0.4
1,941,364	-				-0.8
1,941,391	+				-0.9
1,941,391	+				-0.4
1,941,392	+				-0.2
1,941,392	+				-0.8
1,941,392	+				+0.2
1,941,399	-				-0.1
1,941,399	-				-0.9
1,941,400	-				-0.0
1,941,400	-				-0.6
1,941,400	-				+0.0
1,941,400	-				+0.2