Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0695

Experiment: Thymine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0693 and Dshi_0694 are separated by 157 nucleotidesDshi_0694 and Dshi_0695 overlap by 4 nucleotidesDshi_0695 and Dshi_0696 overlap by 4 nucleotidesDshi_0696 and Dshi_0697 are separated by 15 nucleotides Dshi_0693: Dshi_0693 - 4-oxalocrotonate tautomerase (RefSeq), at 700,069 to 700,644 _0693 Dshi_0694: Dshi_0694 - transcriptional regulator, GntR family (RefSeq), at 700,802 to 701,602 _0694 Dshi_0695: Dshi_0695 - 3-isopropylmalate dehydratase, large subunit (RefSeq), at 701,599 to 702,993 _0695 Dshi_0696: Dshi_0696 - 3-isopropylmalate dehydratase, small subunit (RefSeq), at 702,990 to 703,649 _0696 Dshi_0697: Dshi_0697 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 703,665 to 704,675 _0697 Position (kb) 701 702 703Strain fitness (log2 ratio) -2 -1 0 1 2at 700.606 kb on + strandat 700.618 kb on + strandat 700.698 kb on + strandat 700.729 kb on + strandat 700.865 kb on - strandat 700.901 kb on + strand, within Dshi_0694at 701.054 kb on + strand, within Dshi_0694at 701.301 kb on + strand, within Dshi_0694at 701.320 kb on - strand, within Dshi_0694at 701.332 kb on - strand, within Dshi_0694at 701.385 kb on + strand, within Dshi_0694at 701.425 kb on + strand, within Dshi_0694at 701.482 kb on - strand, within Dshi_0694at 701.482 kb on - strand, within Dshi_0694at 701.525 kb on + strandat 701.525 kb on + strandat 701.525 kb on + strandat 701.541 kb on + strandat 701.603 kb on - strandat 701.715 kb on - strandat 701.769 kb on + strand, within Dshi_0695at 701.779 kb on - strand, within Dshi_0695at 701.784 kb on + strand, within Dshi_0695at 701.859 kb on + strand, within Dshi_0695at 701.918 kb on + strand, within Dshi_0695at 701.947 kb on + strand, within Dshi_0695at 701.955 kb on - strand, within Dshi_0695at 701.955 kb on - strand, within Dshi_0695at 702.074 kb on - strand, within Dshi_0695at 702.125 kb on + strand, within Dshi_0695at 702.133 kb on - strand, within Dshi_0695at 702.228 kb on - strand, within Dshi_0695at 702.271 kb on + strand, within Dshi_0695at 702.351 kb on + strand, within Dshi_0695at 702.376 kb on + strand, within Dshi_0695at 702.376 kb on + strand, within Dshi_0695at 702.391 kb on + strand, within Dshi_0695at 702.448 kb on - strand, within Dshi_0695at 702.467 kb on - strand, within Dshi_0695at 702.484 kb on + strand, within Dshi_0695at 702.696 kb on + strand, within Dshi_0695at 702.774 kb on + strand, within Dshi_0695at 702.799 kb on - strand, within Dshi_0695at 702.809 kb on - strand, within Dshi_0695at 702.810 kb on + strand, within Dshi_0695at 702.830 kb on - strand, within Dshi_0695at 702.832 kb on + strand, within Dshi_0695at 702.872 kb on - strandat 702.883 kb on + strandat 702.901 kb on + strandat 703.054 kb on + strandat 703.087 kb on - strand, within Dshi_0696at 703.106 kb on + strand, within Dshi_0696at 703.164 kb on + strand, within Dshi_0696at 703.178 kb on - strand, within Dshi_0696at 703.254 kb on + strand, within Dshi_0696at 703.350 kb on + strand, within Dshi_0696at 703.358 kb on - strand, within Dshi_0696at 703.377 kb on + strand, within Dshi_0696at 703.449 kb on + strand, within Dshi_0696at 703.524 kb on - strand, within Dshi_0696at 703.583 kb on + strand, within Dshi_0696at 703.591 kb on - strandat 703.685 kb on - strandat 703.685 kb on - strandat 703.768 kb on + strand, within Dshi_0697at 703.772 kb on + strand, within Dshi_0697at 703.775 kb on - strand, within Dshi_0697at 703.775 kb on - strand, within Dshi_0697at 703.780 kb on - strand, within Dshi_0697at 703.786 kb on + strand, within Dshi_0697at 703.816 kb on - strand, within Dshi_0697at 703.881 kb on - strand, within Dshi_0697at 703.883 kb on + strand, within Dshi_0697at 703.891 kb on - strand, within Dshi_0697at 703.910 kb on + strand, within Dshi_0697at 703.975 kb on + strand, within Dshi_0697

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
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700,606 + +0.8
700,618 + +0.3
700,698 + -1.8
700,729 + -0.2
700,865 - -0.5
700,901 + Dshi_0694 0.12 -1.0
701,054 + Dshi_0694 0.31 +0.4
701,301 + Dshi_0694 0.62 +0.0
701,320 - Dshi_0694 0.65 -1.0
701,332 - Dshi_0694 0.66 -0.4
701,385 + Dshi_0694 0.73 -0.3
701,425 + Dshi_0694 0.78 +0.7
701,482 - Dshi_0694 0.85 -0.1
701,482 - Dshi_0694 0.85 -0.1
701,525 + +0.2
701,525 + -0.1
701,525 + -0.1
701,541 + +1.0
701,603 - -0.1
701,715 - +0.4
701,769 + Dshi_0695 0.12 -0.2
701,779 - Dshi_0695 0.13 -0.6
701,784 + Dshi_0695 0.13 +0.2
701,859 + Dshi_0695 0.19 +0.2
701,918 + Dshi_0695 0.23 +0.8
701,947 + Dshi_0695 0.25 +0.7
701,955 - Dshi_0695 0.26 -0.5
701,955 - Dshi_0695 0.26 +0.1
702,074 - Dshi_0695 0.34 +1.4
702,125 + Dshi_0695 0.38 -1.0
702,133 - Dshi_0695 0.38 +0.1
702,228 - Dshi_0695 0.45 +0.0
702,271 + Dshi_0695 0.48 -0.9
702,351 + Dshi_0695 0.54 +1.7
702,376 + Dshi_0695 0.56 -0.2
702,376 + Dshi_0695 0.56 +1.0
702,391 + Dshi_0695 0.57 +0.2
702,448 - Dshi_0695 0.61 +0.6
702,467 - Dshi_0695 0.62 -0.6
702,484 + Dshi_0695 0.63 +0.1
702,696 + Dshi_0695 0.79 +0.0
702,774 + Dshi_0695 0.84 -0.5
702,799 - Dshi_0695 0.86 -0.1
702,809 - Dshi_0695 0.87 +0.8
702,810 + Dshi_0695 0.87 -1.4
702,830 - Dshi_0695 0.88 -0.1
702,832 + Dshi_0695 0.88 +0.1
702,872 - -0.2
702,883 + -0.1
702,901 + -0.3
703,054 + -0.4
703,087 - Dshi_0696 0.15 -0.2
703,106 + Dshi_0696 0.18 +2.0
703,164 + Dshi_0696 0.26 +0.1
703,178 - Dshi_0696 0.28 +0.5
703,254 + Dshi_0696 0.40 +0.3
703,350 + Dshi_0696 0.55 -1.0
703,358 - Dshi_0696 0.56 +0.1
703,377 + Dshi_0696 0.59 +0.5
703,449 + Dshi_0696 0.70 -0.6
703,524 - Dshi_0696 0.81 +0.1
703,583 + Dshi_0696 0.90 -0.5
703,591 - -1.7
703,685 - -0.0
703,685 - -0.9
703,768 + Dshi_0697 0.10 -0.3
703,772 + Dshi_0697 0.11 -0.4
703,775 - Dshi_0697 0.11 -0.7
703,775 - Dshi_0697 0.11 -0.3
703,780 - Dshi_0697 0.11 +2.4
703,786 + Dshi_0697 0.12 +0.5
703,816 - Dshi_0697 0.15 +1.2
703,881 - Dshi_0697 0.21 -0.4
703,883 + Dshi_0697 0.22 -0.4
703,891 - Dshi_0697 0.22 -0.6
703,910 + Dshi_0697 0.24 -0.0
703,975 + Dshi_0697 0.31 -0.5

Or see this region's nucleotide sequence