Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0519

Experiment: Thymine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0518 and Dshi_0519 overlap by 4 nucleotidesDshi_0519 and Dshi_0520 are separated by 151 nucleotides Dshi_0518: Dshi_0518 - Monosaccharide-transporting ATPase (RefSeq), at 502,175 to 503,185 _0518 Dshi_0519: Dshi_0519 - ABC transporter related (RefSeq), at 503,182 to 504,678 _0519 Dshi_0520: Dshi_0520 - 5-methylthioribose kinase (RefSeq), at 504,830 to 506,089 _0520 Position (kb) 503 504 505Strain fitness (log2 ratio) -2 -1 0 1 2at 502.245 kb on + strandat 502.286 kb on + strand, within Dshi_0518at 502.287 kb on + strand, within Dshi_0518at 502.295 kb on - strand, within Dshi_0518at 502.346 kb on + strand, within Dshi_0518at 502.461 kb on + strand, within Dshi_0518at 502.469 kb on - strand, within Dshi_0518at 502.469 kb on - strand, within Dshi_0518at 502.542 kb on - strand, within Dshi_0518at 502.563 kb on + strand, within Dshi_0518at 502.590 kb on - strand, within Dshi_0518at 502.592 kb on + strand, within Dshi_0518at 502.689 kb on + strand, within Dshi_0518at 502.691 kb on - strand, within Dshi_0518at 502.697 kb on - strand, within Dshi_0518at 502.702 kb on - strand, within Dshi_0518at 502.734 kb on - strand, within Dshi_0518at 502.748 kb on + strandat 502.769 kb on - strand, within Dshi_0518at 502.769 kb on - strand, within Dshi_0518at 502.781 kb on + strand, within Dshi_0518at 502.789 kb on - strand, within Dshi_0518at 502.826 kb on - strand, within Dshi_0518at 502.844 kb on - strand, within Dshi_0518at 502.868 kb on - strand, within Dshi_0518at 502.895 kb on + strand, within Dshi_0518at 502.895 kb on + strand, within Dshi_0518at 503.016 kb on - strand, within Dshi_0518at 503.018 kb on + strand, within Dshi_0518at 503.029 kb on + strand, within Dshi_0518at 503.082 kb on + strand, within Dshi_0518at 503.132 kb on + strandat 503.165 kb on + strandat 503.350 kb on + strand, within Dshi_0519at 503.351 kb on - strand, within Dshi_0519at 503.367 kb on - strand, within Dshi_0519at 503.410 kb on + strand, within Dshi_0519at 503.417 kb on + strand, within Dshi_0519at 503.427 kb on - strand, within Dshi_0519at 503.434 kb on - strand, within Dshi_0519at 503.438 kb on + strand, within Dshi_0519at 503.453 kb on + strand, within Dshi_0519at 503.461 kb on - strand, within Dshi_0519at 503.537 kb on + strand, within Dshi_0519at 503.544 kb on - strand, within Dshi_0519at 503.559 kb on - strand, within Dshi_0519at 503.560 kb on + strand, within Dshi_0519at 503.570 kb on + strand, within Dshi_0519at 503.580 kb on - strand, within Dshi_0519at 503.609 kb on + strand, within Dshi_0519at 503.609 kb on + strand, within Dshi_0519at 503.609 kb on + strand, within Dshi_0519at 503.639 kb on - strand, within Dshi_0519at 503.665 kb on - strand, within Dshi_0519at 503.669 kb on - strand, within Dshi_0519at 503.683 kb on + strand, within Dshi_0519at 503.685 kb on + strand, within Dshi_0519at 503.685 kb on + strand, within Dshi_0519at 503.746 kb on - strand, within Dshi_0519at 503.746 kb on - strand, within Dshi_0519at 503.796 kb on - strand, within Dshi_0519at 503.796 kb on - strand, within Dshi_0519at 503.891 kb on + strand, within Dshi_0519at 503.896 kb on - strand, within Dshi_0519at 503.925 kb on + strand, within Dshi_0519at 503.925 kb on + strand, within Dshi_0519at 503.960 kb on + strand, within Dshi_0519at 503.960 kb on + strand, within Dshi_0519at 503.993 kb on + strand, within Dshi_0519at 504.002 kb on - strand, within Dshi_0519at 504.014 kb on + strand, within Dshi_0519at 504.058 kb on - strand, within Dshi_0519at 504.071 kb on - strand, within Dshi_0519at 504.124 kb on - strand, within Dshi_0519at 504.124 kb on - strand, within Dshi_0519at 504.125 kb on + strand, within Dshi_0519at 504.139 kb on - strand, within Dshi_0519at 504.140 kb on + strand, within Dshi_0519at 504.206 kb on - strand, within Dshi_0519at 504.230 kb on - strand, within Dshi_0519at 504.336 kb on + strand, within Dshi_0519at 504.344 kb on - strand, within Dshi_0519at 504.344 kb on - strand, within Dshi_0519at 504.365 kb on - strand, within Dshi_0519at 504.387 kb on + strand, within Dshi_0519at 504.387 kb on + strand, within Dshi_0519at 504.405 kb on + strand, within Dshi_0519at 504.483 kb on + strand, within Dshi_0519at 504.491 kb on - strand, within Dshi_0519at 504.589 kb on + strandat 504.589 kb on + strandat 504.597 kb on - strandat 504.632 kb on - strandat 504.642 kb on - strandat 504.642 kb on - strandat 504.679 kb on - strandat 504.704 kb on + strandat 504.709 kb on + strandat 504.712 kb on - strandat 504.767 kb on + strandat 504.784 kb on + strandat 504.789 kb on + strandat 504.789 kb on + strandat 504.791 kb on + strandat 504.791 kb on + strandat 504.797 kb on - strandat 504.868 kb on - strandat 504.876 kb on - strandat 504.883 kb on + strandat 504.883 kb on + strandat 504.891 kb on - strandat 504.891 kb on - strandat 504.891 kb on - strandat 504.910 kb on + strandat 504.910 kb on - strandat 504.979 kb on + strand, within Dshi_0520at 504.994 kb on - strand, within Dshi_0520at 505.026 kb on + strand, within Dshi_0520at 505.032 kb on - strand, within Dshi_0520at 505.048 kb on + strand, within Dshi_0520at 505.110 kb on + strand, within Dshi_0520at 505.365 kb on + strand, within Dshi_0520at 505.378 kb on - strand, within Dshi_0520at 505.378 kb on - strand, within Dshi_0520at 505.413 kb on - strand, within Dshi_0520at 505.425 kb on + strand, within Dshi_0520at 505.452 kb on + strand, within Dshi_0520at 505.471 kb on + strand, within Dshi_0520at 505.476 kb on + strand, within Dshi_0520at 505.496 kb on - strand, within Dshi_0520at 505.554 kb on + strand, within Dshi_0520at 505.638 kb on - strand, within Dshi_0520

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thymine (N)
remove
502,245 + +0.4
502,286 + Dshi_0518 0.11 -0.7
502,287 + Dshi_0518 0.11 -0.2
502,295 - Dshi_0518 0.12 +1.0
502,346 + Dshi_0518 0.17 -1.6
502,461 + Dshi_0518 0.28 -1.8
502,469 - Dshi_0518 0.29 +1.0
502,469 - Dshi_0518 0.29 -0.6
502,542 - Dshi_0518 0.36 -0.5
502,563 + Dshi_0518 0.38 +0.2
502,590 - Dshi_0518 0.41 -0.4
502,592 + Dshi_0518 0.41 -0.3
502,689 + Dshi_0518 0.51 +0.4
502,691 - Dshi_0518 0.51 +0.1
502,697 - Dshi_0518 0.52 -0.9
502,702 - Dshi_0518 0.52 +0.3
502,734 - Dshi_0518 0.55 +0.0
502,748 + +1.7
502,769 - Dshi_0518 0.59 -0.3
502,769 - Dshi_0518 0.59 -0.7
502,781 + Dshi_0518 0.60 -0.7
502,789 - Dshi_0518 0.61 -0.1
502,826 - Dshi_0518 0.64 -0.3
502,844 - Dshi_0518 0.66 +0.2
502,868 - Dshi_0518 0.69 +1.3
502,895 + Dshi_0518 0.71 +0.3
502,895 + Dshi_0518 0.71 -0.3
503,016 - Dshi_0518 0.83 +0.9
503,018 + Dshi_0518 0.83 -1.1
503,029 + Dshi_0518 0.84 -0.4
503,082 + Dshi_0518 0.90 +0.6
503,132 + +0.7
503,165 + -0.6
503,350 + Dshi_0519 0.11 +1.7
503,351 - Dshi_0519 0.11 +0.7
503,367 - Dshi_0519 0.12 +1.0
503,410 + Dshi_0519 0.15 +0.4
503,417 + Dshi_0519 0.16 -0.0
503,427 - Dshi_0519 0.16 -0.1
503,434 - Dshi_0519 0.17 -0.1
503,438 + Dshi_0519 0.17 -0.3
503,453 + Dshi_0519 0.18 -1.3
503,461 - Dshi_0519 0.19 -0.0
503,537 + Dshi_0519 0.24 +0.2
503,544 - Dshi_0519 0.24 -0.1
503,559 - Dshi_0519 0.25 -0.8
503,560 + Dshi_0519 0.25 -0.4
503,570 + Dshi_0519 0.26 -1.7
503,580 - Dshi_0519 0.27 +1.7
503,609 + Dshi_0519 0.29 -0.5
503,609 + Dshi_0519 0.29 -0.6
503,609 + Dshi_0519 0.29 -0.4
503,639 - Dshi_0519 0.31 -0.7
503,665 - Dshi_0519 0.32 -1.1
503,669 - Dshi_0519 0.33 -0.1
503,683 + Dshi_0519 0.33 -0.1
503,685 + Dshi_0519 0.34 -0.9
503,685 + Dshi_0519 0.34 -0.5
503,746 - Dshi_0519 0.38 -1.1
503,746 - Dshi_0519 0.38 -0.2
503,796 - Dshi_0519 0.41 -0.5
503,796 - Dshi_0519 0.41 -0.2
503,891 + Dshi_0519 0.47 -0.9
503,896 - Dshi_0519 0.48 +1.7
503,925 + Dshi_0519 0.50 -0.4
503,925 + Dshi_0519 0.50 -0.0
503,960 + Dshi_0519 0.52 -0.6
503,960 + Dshi_0519 0.52 -0.6
503,993 + Dshi_0519 0.54 +0.0
504,002 - Dshi_0519 0.55 +0.3
504,014 + Dshi_0519 0.56 -0.4
504,058 - Dshi_0519 0.59 +0.1
504,071 - Dshi_0519 0.59 -0.8
504,124 - Dshi_0519 0.63 -1.7
504,124 - Dshi_0519 0.63 -0.4
504,125 + Dshi_0519 0.63 -0.6
504,139 - Dshi_0519 0.64 -1.8
504,140 + Dshi_0519 0.64 -0.8
504,206 - Dshi_0519 0.68 -0.3
504,230 - Dshi_0519 0.70 -0.6
504,336 + Dshi_0519 0.77 -1.0
504,344 - Dshi_0519 0.78 -0.8
504,344 - Dshi_0519 0.78 +0.4
504,365 - Dshi_0519 0.79 -0.0
504,387 + Dshi_0519 0.80 +0.2
504,387 + Dshi_0519 0.80 -1.6
504,405 + Dshi_0519 0.82 -2.3
504,483 + Dshi_0519 0.87 +0.2
504,491 - Dshi_0519 0.87 -0.3
504,589 + +0.3
504,589 + -0.1
504,597 - -0.5
504,632 - +0.5
504,642 - -0.8
504,642 - -0.3
504,679 - -0.3
504,704 + -0.3
504,709 + +0.4
504,712 - -0.9
504,767 + +0.0
504,784 + +0.1
504,789 + -2.1
504,789 + +0.7
504,791 + -0.8
504,791 + -0.1
504,797 - -0.6
504,868 - -0.4
504,876 - -1.0
504,883 + -1.4
504,883 + -1.1
504,891 - +1.2
504,891 - -0.4
504,891 - +0.4
504,910 + -0.2
504,910 - +0.2
504,979 + Dshi_0520 0.12 -0.9
504,994 - Dshi_0520 0.13 +0.3
505,026 + Dshi_0520 0.16 +1.3
505,032 - Dshi_0520 0.16 -0.6
505,048 + Dshi_0520 0.17 -0.8
505,110 + Dshi_0520 0.22 +0.1
505,365 + Dshi_0520 0.42 +0.7
505,378 - Dshi_0520 0.43 -1.6
505,378 - Dshi_0520 0.43 -1.0
505,413 - Dshi_0520 0.46 -1.0
505,425 + Dshi_0520 0.47 -0.1
505,452 + Dshi_0520 0.49 -1.5
505,471 + Dshi_0520 0.51 +0.1
505,476 + Dshi_0520 0.51 +0.4
505,496 - Dshi_0520 0.53 +2.2
505,554 + Dshi_0520 0.57 +0.5
505,638 - Dshi_0520 0.64 +0.3

Or see this region's nucleotide sequence