Experiment: Thymine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0434 and Dshi_0435 are separated by 253 nucleotides Dshi_0435 and Dshi_0436 overlap by 4 nucleotides Dshi_0436 and Dshi_0437 overlap by 4 nucleotides Dshi_0437 and Dshi_0438 overlap by 4 nucleotides Dshi_0438 and Dshi_0439 overlap by 10 nucleotides
Dshi_0434: Dshi_0434 - carbamate kinase (RefSeq), at 425,925 to 426,863
_0434
Dshi_0435: Dshi_0435 - ATP synthase F1, beta subunit (RefSeq), at 427,117 to 428,505
_0435
Dshi_0436: Dshi_0436 - ATP synthase F1, epsilon subunit (RefSeq), at 428,502 to 428,912
_0436
Dshi_0437: Dshi_0437 - F0F1-ATPase subunit, putative (RefSeq), at 428,909 to 429,196
_0437
Dshi_0438: Dshi_0438 - hypothetical protein (RefSeq), at 429,193 to 429,498
_0438
Dshi_0439: Dshi_0439 - ATP synthase F0, A subunit (RefSeq), at 429,489 to 430,178
_0439
Position (kb) 427
428
429 Strain fitness (log2 ratio) -1
0
1 at 426.213 kb on + strand, within Dshi_0434 at 426.213 kb on + strand, within Dshi_0434 at 426.221 kb on - strand, within Dshi_0434 at 426.242 kb on + strand, within Dshi_0434 at 426.350 kb on - strand, within Dshi_0434 at 426.363 kb on + strand, within Dshi_0434 at 426.456 kb on - strand, within Dshi_0434 at 426.456 kb on - strand, within Dshi_0434 at 426.856 kb on - strand at 426.882 kb on + strand at 426.882 kb on + strand at 426.974 kb on + strand at 426.998 kb on - strand at 427.021 kb on + strand at 427.107 kb on + strand at 427.113 kb on + strand at 427.135 kb on + strand at 427.155 kb on - strand at 427.289 kb on + strand, within Dshi_0435 at 427.415 kb on - strand, within Dshi_0435 at 427.498 kb on + strand, within Dshi_0435 at 427.561 kb on + strand, within Dshi_0435 at 427.564 kb on - strand, within Dshi_0435 at 427.582 kb on - strand at 427.640 kb on + strand, within Dshi_0435 at 427.650 kb on + strand, within Dshi_0435 at 427.708 kb on - strand, within Dshi_0435 at 427.709 kb on + strand, within Dshi_0435 at 427.738 kb on - strand, within Dshi_0435 at 427.823 kb on + strand, within Dshi_0435 at 427.842 kb on - strand, within Dshi_0435 at 427.897 kb on - strand, within Dshi_0435 at 427.960 kb on + strand, within Dshi_0435 at 428.071 kb on + strand, within Dshi_0435 at 428.113 kb on - strand, within Dshi_0435 at 428.114 kb on + strand, within Dshi_0435 at 428.139 kb on + strand, within Dshi_0435 at 428.162 kb on + strand, within Dshi_0435 at 428.209 kb on + strand, within Dshi_0435 at 428.264 kb on - strand, within Dshi_0435 at 428.278 kb on + strand, within Dshi_0435 at 428.278 kb on + strand, within Dshi_0435 at 428.286 kb on - strand, within Dshi_0435 at 428.312 kb on + strand, within Dshi_0435 at 428.405 kb on + strand at 428.530 kb on + strand at 428.571 kb on - strand, within Dshi_0436 at 428.781 kb on - strand, within Dshi_0436 at 428.831 kb on - strand, within Dshi_0436 at 428.957 kb on + strand, within Dshi_0437 at 429.079 kb on - strand, within Dshi_0437 at 429.183 kb on - strand at 429.273 kb on + strand, within Dshi_0438 at 429.281 kb on - strand, within Dshi_0438 at 429.330 kb on + strand, within Dshi_0438 at 429.332 kb on + strand, within Dshi_0438 at 429.342 kb on + strand, within Dshi_0438 at 429.411 kb on - strand, within Dshi_0438 at 429.492 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine (N) remove 426,213 + Dshi_0434 0.31 -0.3 426,213 + Dshi_0434 0.31 -0.5 426,221 - Dshi_0434 0.32 -1.6 426,242 + Dshi_0434 0.34 -0.7 426,350 - Dshi_0434 0.45 -1.1 426,363 + Dshi_0434 0.47 +1.4 426,456 - Dshi_0434 0.57 +0.6 426,456 - Dshi_0434 0.57 +0.0 426,856 - -0.3 426,882 + -1.0 426,882 + -0.8 426,974 + +0.0 426,998 - +0.3 427,021 + -0.7 427,107 + -0.4 427,113 + -0.5 427,135 + -0.9 427,155 - +0.9 427,289 + Dshi_0435 0.12 -0.1 427,415 - Dshi_0435 0.21 -1.6 427,498 + Dshi_0435 0.27 -0.9 427,561 + Dshi_0435 0.32 -0.5 427,564 - Dshi_0435 0.32 -0.0 427,582 - +0.1 427,640 + Dshi_0435 0.38 -1.3 427,650 + Dshi_0435 0.38 -0.9 427,708 - Dshi_0435 0.43 -0.6 427,709 + Dshi_0435 0.43 +1.6 427,738 - Dshi_0435 0.45 -0.8 427,823 + Dshi_0435 0.51 +0.1 427,842 - Dshi_0435 0.52 -0.7 427,897 - Dshi_0435 0.56 -0.5 427,960 + Dshi_0435 0.61 +1.3 428,071 + Dshi_0435 0.69 +0.1 428,113 - Dshi_0435 0.72 +0.8 428,114 + Dshi_0435 0.72 -1.3 428,139 + Dshi_0435 0.74 +0.1 428,162 + Dshi_0435 0.75 -0.9 428,209 + Dshi_0435 0.79 -0.4 428,264 - Dshi_0435 0.83 -0.9 428,278 + Dshi_0435 0.84 +0.0 428,278 + Dshi_0435 0.84 -0.7 428,286 - Dshi_0435 0.84 -0.5 428,312 + Dshi_0435 0.86 -0.5 428,405 + +1.5 428,530 + -0.8 428,571 - Dshi_0436 0.17 +0.4 428,781 - Dshi_0436 0.68 +0.5 428,831 - Dshi_0436 0.80 -0.3 428,957 + Dshi_0437 0.17 -0.4 429,079 - Dshi_0437 0.59 -0.1 429,183 - +0.1 429,273 + Dshi_0438 0.26 -0.3 429,281 - Dshi_0438 0.29 -0.7 429,330 + Dshi_0438 0.45 -0.7 429,332 + Dshi_0438 0.45 -0.4 429,342 + Dshi_0438 0.49 +0.6 429,411 - Dshi_0438 0.71 -0.7 429,492 + -1.1
Or see this region's nucleotide sequence