Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08350

Experiment: Formate McCas no stress control 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS08345 and MMP_RS08350 are separated by 1 nucleotidesMMP_RS08350 and MMP_RS08355 are separated by 11 nucleotidesMMP_RS08355 and MMP_RS08360 are separated by 9 nucleotides MMP_RS08345: MMP_RS08345 - 4Fe-4S binding protein, at 1,567,947 to 1,569,392 _RS08345 MMP_RS08350: MMP_RS08350 - hypothetical protein, at 1,569,394 to 1,569,654 _RS08350 MMP_RS08355: MMP_RS08355 - Na(+)/H(+) antiporter subunit B, at 1,569,666 to 1,570,427 _RS08355 MMP_RS08360: MMP_RS08360 - hypothetical protein, at 1,570,437 to 1,570,745 _RS08360 Position (kb) 1569 1570Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1568.415 kb on - strand, within MMP_RS08345at 1568.415 kb on - strand, within MMP_RS08345at 1568.496 kb on + strand, within MMP_RS08345at 1568.529 kb on - strand, within MMP_RS08345at 1568.529 kb on - strand, within MMP_RS08345at 1568.594 kb on - strand, within MMP_RS08345at 1568.594 kb on - strand, within MMP_RS08345at 1568.594 kb on - strand, within MMP_RS08345at 1568.595 kb on + strand, within MMP_RS08345at 1568.620 kb on + strand, within MMP_RS08345at 1568.637 kb on - strand, within MMP_RS08345at 1568.703 kb on - strand, within MMP_RS08345at 1568.703 kb on - strand, within MMP_RS08345at 1568.824 kb on + strand, within MMP_RS08345at 1568.865 kb on - strand, within MMP_RS08345at 1569.026 kb on + strand, within MMP_RS08345at 1569.039 kb on + strand, within MMP_RS08345at 1569.039 kb on + strand, within MMP_RS08345at 1569.040 kb on - strand, within MMP_RS08345at 1569.141 kb on - strand, within MMP_RS08345at 1569.188 kb on + strand, within MMP_RS08345at 1569.188 kb on + strand, within MMP_RS08345at 1569.338 kb on - strandat 1569.392 kb on - strandat 1569.486 kb on + strand, within MMP_RS08350at 1569.667 kb on - strandat 1569.690 kb on + strandat 1569.850 kb on - strand, within MMP_RS08355at 1569.851 kb on + strand, within MMP_RS08355at 1569.983 kb on - strand, within MMP_RS08355at 1569.984 kb on + strand, within MMP_RS08355at 1569.985 kb on - strand, within MMP_RS08355at 1569.986 kb on + strand, within MMP_RS08355at 1570.215 kb on - strand, within MMP_RS08355at 1570.228 kb on + strand, within MMP_RS08355at 1570.239 kb on + strand, within MMP_RS08355at 1570.450 kb on - strandat 1570.451 kb on + strandat 1570.506 kb on - strand, within MMP_RS08360at 1570.507 kb on + strand, within MMP_RS08360at 1570.559 kb on + strand, within MMP_RS08360at 1570.601 kb on - strand, within MMP_RS08360at 1570.609 kb on - strand, within MMP_RS08360

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
remove
1,568,415 - MMP_RS08345 0.32 -1.9
1,568,415 - MMP_RS08345 0.32 +0.7
1,568,496 + MMP_RS08345 0.38 -2.7
1,568,529 - MMP_RS08345 0.40 +0.5
1,568,529 - MMP_RS08345 0.40 -0.1
1,568,594 - MMP_RS08345 0.45 +0.2
1,568,594 - MMP_RS08345 0.45 -3.0
1,568,594 - MMP_RS08345 0.45 +1.3
1,568,595 + MMP_RS08345 0.45 +1.6
1,568,620 + MMP_RS08345 0.47 -0.1
1,568,637 - MMP_RS08345 0.48 +0.8
1,568,703 - MMP_RS08345 0.52 +0.3
1,568,703 - MMP_RS08345 0.52 +0.2
1,568,824 + MMP_RS08345 0.61 +1.7
1,568,865 - MMP_RS08345 0.63 -2.6
1,569,026 + MMP_RS08345 0.75 -0.3
1,569,039 + MMP_RS08345 0.76 -0.8
1,569,039 + MMP_RS08345 0.76 -0.8
1,569,040 - MMP_RS08345 0.76 -0.2
1,569,141 - MMP_RS08345 0.83 -1.8
1,569,188 + MMP_RS08345 0.86 +1.7
1,569,188 + MMP_RS08345 0.86 -3.3
1,569,338 - -2.5
1,569,392 - +1.6
1,569,486 + MMP_RS08350 0.35 +0.5
1,569,667 - -3.9
1,569,690 + -3.5
1,569,850 - MMP_RS08355 0.24 +1.1
1,569,851 + MMP_RS08355 0.24 +1.5
1,569,983 - MMP_RS08355 0.42 -2.6
1,569,984 + MMP_RS08355 0.42 -0.6
1,569,985 - MMP_RS08355 0.42 -0.5
1,569,986 + MMP_RS08355 0.42 +0.5
1,570,215 - MMP_RS08355 0.72 -2.5
1,570,228 + MMP_RS08355 0.74 -2.1
1,570,239 + MMP_RS08355 0.75 +1.4
1,570,450 - +1.1
1,570,451 + -0.3
1,570,506 - MMP_RS08360 0.22 +0.0
1,570,507 + MMP_RS08360 0.23 +1.2
1,570,559 + MMP_RS08360 0.39 +0.7
1,570,601 - MMP_RS08360 0.53 +1.4
1,570,609 - MMP_RS08360 0.56 -0.1

Or see this region's nucleotide sequence