Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08075

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
1,520,424	+				+1.0
1,520,488	-				+0.7
1,520,488	-				+1.2
1,520,488	-				-0.5
1,520,489	+				+0.4
1,520,489	+				+1.0
1,520,489	+				+0.1
1,520,489	+				-2.1
1,520,489	+				-1.6
1,520,489	+				+0.6
1,520,489	+				-3.8
1,520,510	+				+1.1
1,520,559	-				+0.1
1,520,639	-		MMP_RS08070	0.25	+0.0
1,520,670	-		MMP_RS08070	0.30	-0.3
1,520,727	+		MMP_RS08070	0.41	+0.8
1,520,838	-		MMP_RS08070	0.62	-3.5
1,520,909	+		MMP_RS08070	0.75	-1.3
1,520,912	+		MMP_RS08070	0.76	-2.1
1,520,915	-		MMP_RS08070	0.76	-0.4
1,521,003	-				-1.2
1,521,004	+				-1.5
1,521,004	+				-1.7
1,521,151	-		MMP_RS08075	0.43	-0.5
1,521,152	+		MMP_RS08075	0.43	+0.0
1,521,158	-		MMP_RS08075	0.45	-0.2
1,521,186	-		MMP_RS08075	0.54	-1.0
1,521,190	+		MMP_RS08075	0.55	-1.6
1,521,348	-				+0.3
1,521,350	-				-0.2
1,521,369	-				-0.8
1,521,370	+				+0.6
1,521,370	+				-1.2
1,521,370	+				+1.6
1,521,373	-				-0.5
1,521,493	-		MMP_RS08080	0.21	-1.4
1,521,493	-		MMP_RS08080	0.21	+1.5
1,521,564	+		MMP_RS08080	0.30	+0.9
1,521,572	+		MMP_RS08080	0.31	+2.1
1,521,577	+		MMP_RS08080	0.32	-1.6
1,521,755	-		MMP_RS08080	0.55	-0.8
1,521,849	-		MMP_RS08080	0.68	-0.1
1,521,868	-		MMP_RS08080	0.70	+0.9
1,521,881	+		MMP_RS08080	0.72	+0.3
1,521,909	+		MMP_RS08080	0.76	+1.6
1,521,977	-		MMP_RS08080	0.85	+0.9
1,522,010	-		MMP_RS08080	0.89	+0.2
1,522,015	-		MMP_RS08080	0.90	-0.3
1,522,015	-		MMP_RS08080	0.90	+0.7
1,522,071	-				+0.2
1,522,076	+				-0.6
1,522,086	+				-0.7
1,522,123	-				+0.2
1,522,265	+		MMP_RS08085	0.17	+0.6
1,522,309	-		MMP_RS08085	0.22	+1.9