Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07835 and MMP_RS07840 are separated by 51 nucleotides MMP_RS07840 and MMP_RS07845 are separated by 42 nucleotides MMP_RS07845 and MMP_RS07850 are separated by 110 nucleotides MMP_RS07850 and MMP_RS07855 overlap by 4 nucleotides
MMP_RS07835: MMP_RS07835 - TldD/PmbA family protein, at 1,484,018 to 1,485,280
_RS07835
MMP_RS07840: MMP_RS07840 - ribonuclease III, at 1,485,332 to 1,486,021
_RS07840
MMP_RS07845: MMP_RS07845 - LL-diaminopimelate aminotransferase, at 1,486,064 to 1,487,314
_RS07845
MMP_RS07850: MMP_RS07850 - prephenate dehydratase, at 1,487,425 to 1,488,231
_RS07850
MMP_RS07855: MMP_RS07855 - class I SAM-dependent methyltransferase, at 1,488,228 to 1,488,938
_RS07855
Position (kb)
1486
1487
1488 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1485.123 kb on + strand, within MMP_RS07835 at 1485.313 kb on - strand at 1485.370 kb on + strand at 1485.385 kb on + strand at 1485.395 kb on + strand at 1485.566 kb on - strand, within MMP_RS07840 at 1485.761 kb on + strand, within MMP_RS07840 at 1486.083 kb on + strand at 1486.477 kb on + strand, within MMP_RS07845 at 1486.557 kb on - strand, within MMP_RS07845 at 1486.755 kb on - strand, within MMP_RS07845 at 1487.346 kb on - strand at 1487.366 kb on + strand at 1487.387 kb on - strand at 1487.388 kb on + strand at 1487.455 kb on - strand at 1487.507 kb on - strand, within MMP_RS07850 at 1487.517 kb on + strand, within MMP_RS07850 at 1487.707 kb on + strand, within MMP_RS07850
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 1,485,123 + MMP_RS07835 0.87 +0.1 1,485,313 - -2.7 1,485,370 + -0.9 1,485,385 + -1.6 1,485,395 + +0.4 1,485,566 - MMP_RS07840 0.34 +1.0 1,485,761 + MMP_RS07840 0.62 -0.1 1,486,083 + -0.4 1,486,477 + MMP_RS07845 0.33 +0.3 1,486,557 - MMP_RS07845 0.39 -1.0 1,486,755 - MMP_RS07845 0.55 -3.6 1,487,346 - -0.5 1,487,366 + +0.1 1,487,387 - -3.9 1,487,388 + -1.2 1,487,455 - -0.3 1,487,507 - MMP_RS07850 0.10 +0.0 1,487,517 + MMP_RS07850 0.11 -1.7 1,487,707 + MMP_RS07850 0.35 +0.3
Or see this region's nucleotide sequence