Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07805 and MMP_RS07810 are separated by 166 nucleotides MMP_RS07810 and MMP_RS07815 are separated by 26 nucleotides MMP_RS07815 and MMP_RS07820 are separated by 9 nucleotides
MMP_RS07805: MMP_RS07805 - ABC transporter permease, at 1,478,743 to 1,479,510
_RS07805
MMP_RS07810: MMP_RS07810 - hydrogenase nickel incorporation protein HypB, at 1,479,677 to 1,480,351
_RS07810
MMP_RS07815: MMP_RS07815 - DUF2120 domain-containing protein, at 1,480,378 to 1,480,797
_RS07815
MMP_RS07820: MMP_RS07820 - UPF0104 family protein, at 1,480,807 to 1,481,829
_RS07820
Position (kb)
1480
1481 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1479.443 kb on + strand at 1479.534 kb on + strand at 1479.601 kb on - strand at 1479.605 kb on + strand at 1479.621 kb on - strand at 1479.640 kb on - strand at 1479.640 kb on - strand at 1479.641 kb on + strand at 1479.641 kb on + strand at 1479.641 kb on + strand at 1479.651 kb on - strand at 1479.652 kb on + strand at 1479.652 kb on + strand at 1479.714 kb on - strand at 1479.715 kb on + strand at 1480.003 kb on + strand at 1480.182 kb on - strand at 1480.276 kb on + strand at 1480.316 kb on + strand at 1480.336 kb on + strand at 1480.353 kb on - strand at 1480.355 kb on - strand at 1480.358 kb on + strand at 1480.358 kb on + strand at 1480.699 kb on - strand, within MMP_RS07815 at 1480.780 kb on - strand at 1480.780 kb on - strand at 1480.780 kb on - strand at 1480.786 kb on - strand at 1480.797 kb on - strand at 1480.809 kb on + strand at 1480.823 kb on - strand at 1480.958 kb on - strand, within MMP_RS07820 at 1481.109 kb on - strand, within MMP_RS07820 at 1481.209 kb on + strand, within MMP_RS07820 at 1481.231 kb on + strand, within MMP_RS07820 at 1481.399 kb on + strand, within MMP_RS07820 at 1481.551 kb on - strand, within MMP_RS07820 at 1481.668 kb on - strand, within MMP_RS07820 at 1481.744 kb on + strand at 1481.758 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 1,479,443 + -0.0 1,479,534 + -1.1 1,479,601 - -3.4 1,479,605 + -4.0 1,479,621 - +0.1 1,479,640 - -2.0 1,479,640 - -2.2 1,479,641 + +0.4 1,479,641 + +0.6 1,479,641 + -0.2 1,479,651 - -0.7 1,479,652 + -0.2 1,479,652 + -1.3 1,479,714 - +0.6 1,479,715 + -2.7 1,480,003 + -2.7 1,480,182 - -0.2 1,480,276 + -0.3 1,480,316 + -1.4 1,480,336 + -1.2 1,480,353 - +0.1 1,480,355 - -1.4 1,480,358 + +0.2 1,480,358 + +1.1 1,480,699 - MMP_RS07815 0.76 -1.1 1,480,780 - +0.6 1,480,780 - -1.2 1,480,780 - -0.2 1,480,786 - -1.3 1,480,797 - -3.6 1,480,809 + +0.7 1,480,823 - -0.9 1,480,958 - MMP_RS07820 0.15 +1.9 1,481,109 - MMP_RS07820 0.30 +3.1 1,481,209 + MMP_RS07820 0.39 +1.7 1,481,231 + MMP_RS07820 0.41 +2.4 1,481,399 + MMP_RS07820 0.58 +2.0 1,481,551 - MMP_RS07820 0.73 +0.9 1,481,668 - MMP_RS07820 0.84 +1.3 1,481,744 + +0.5 1,481,758 + +1.3
Or see this region's nucleotide sequence