Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07700

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
1,458,101	-				+0.4
1,458,439	+				-0.6
1,458,630	+		MMP_RS07695	0.21	-1.7
1,458,654	+		MMP_RS07695	0.26	+1.3
1,458,683	-		MMP_RS07695	0.32	+0.0
1,458,789	+		MMP_RS07695	0.54	+0.5
1,458,818	-		MMP_RS07695	0.60	-3.7
1,458,824	-		MMP_RS07695	0.61	-1.3
1,458,941	-		MMP_RS07695	0.86	+0.0
1,458,942	+		MMP_RS07695	0.86	-0.6
1,459,019	-				-3.1
1,459,108	+		MMP_RS07700	0.13	-0.2
1,459,115	+		MMP_RS07700	0.14	-2.3
1,459,131	+		MMP_RS07700	0.16	-2.5
1,459,144	-		MMP_RS07700	0.18	-1.0
1,459,170	-		MMP_RS07700	0.21	-3.7
1,459,208	-		MMP_RS07700	0.26	-1.5
1,459,234	-		MMP_RS07700	0.29	+0.3
1,459,235	+		MMP_RS07700	0.29	+0.1
1,459,297	-		MMP_RS07700	0.37	-1.3
1,459,347	+		MMP_RS07700	0.44	+0.9
1,459,370	+		MMP_RS07700	0.47	-3.0
1,459,449	+		MMP_RS07700	0.57	+0.4
1,459,452	+		MMP_RS07700	0.57	-3.9
1,459,511	-		MMP_RS07700	0.65	-0.2
1,459,555	-		MMP_RS07700	0.70	-0.6
1,459,556	+		MMP_RS07700	0.70	-0.5
1,459,556	+		MMP_RS07700	0.70	-1.5
1,459,589	+		MMP_RS07700	0.75	-3.3
1,459,699	-		MMP_RS07700	0.89	+0.1
1,459,722	-				-0.7
1,459,722	-				+1.3
1,459,763	+				-1.2
1,459,763	+				-1.5
1,459,841	+				+1.7
1,459,861	-		MMP_RS07705	0.11	-1.9
1,459,907	-		MMP_RS07705	0.20	-1.3
1,459,908	+		MMP_RS07705	0.20	+1.1
1,459,954	+		MMP_RS07705	0.29	+0.0
1,459,956	+		MMP_RS07705	0.29	-2.3
1,459,984	-		MMP_RS07705	0.35	-1.6
1,459,985	+		MMP_RS07705	0.35	+1.1
1,460,055	+		MMP_RS07705	0.49	-2.0
1,460,122	-		MMP_RS07705	0.62	+0.9
1,460,182	+		MMP_RS07705	0.73	-3.0
1,460,188	-		MMP_RS07705	0.75	+0.3
1,460,188	-		MMP_RS07705	0.75	-2.3
1,460,189	+		MMP_RS07705	0.75	-1.8
1,460,192	+		MMP_RS07705	0.75	-2.7
1,460,192	+		MMP_RS07705	0.75	-0.4
1,460,208	+		MMP_RS07705	0.79	+2.5
1,460,208	+		MMP_RS07705	0.79	-1.3
1,460,294	-				+2.2
1,460,294	-				+0.9
1,460,294	-				-0.8
1,460,317	-				-1.3
1,460,328	-				-0.3
1,460,359	+				-1.5
1,460,369	-				-1.7
1,460,374	-				+1.3
1,460,377	+				-0.5
1,460,467	-				-0.4
1,460,490	+		MMP_RS07710	0.11	+0.1
1,460,536	-		MMP_RS07710	0.15	+1.9
1,460,550	+		MMP_RS07710	0.17	-1.8
1,460,566	-		MMP_RS07710	0.18	-1.2
1,460,587	-		MMP_RS07710	0.20	-0.5
1,460,664	+		MMP_RS07710	0.27	+0.5
1,460,679	+		MMP_RS07710	0.29	-2.0
1,460,683	-		MMP_RS07710	0.29	-1.5
1,460,694	+		MMP_RS07710	0.30	+1.0
1,460,717	+		MMP_RS07710	0.32	+0.9