Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07675

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
1,453,034	-				-0.2
1,453,132	-				-1.1
1,453,132	-				-0.2
1,453,148	-				-0.2
1,453,398	+				-1.8
1,453,771	-				+0.3
1,453,795	-				-0.6
1,453,798	+				-2.2
1,453,804	-				+1.3
1,453,815	-				+0.7
1,453,815	-				-0.0
1,453,815	-				-1.2
1,453,817	-				+0.5
1,453,818	+				-0.2
1,453,820	-				+0.3
1,453,821	+				+0.8
1,453,826	+				-0.1
1,453,828	-				-1.8
1,453,828	-				+1.7
1,453,829	+				-1.5
1,453,880	+				+0.9
1,453,888	+				-2.2
1,453,893	-				-1.2
1,453,897	-				+1.5
1,453,903	+				-2.3
1,453,925	+				-1.2
1,453,925	+				-1.1
1,453,925	+				-1.7
1,453,926	-				+1.3
1,453,927	+				+0.1
1,453,932	+				-0.6
1,453,932	+				-0.3
1,453,936	-				+1.8
1,453,936	-				+1.4
1,453,936	-				-0.4
1,453,944	-				-0.5
1,453,945	+				+1.6
1,454,016	+		MMP_RS07675	0.11	-2.0
1,454,018	-		MMP_RS07675	0.11	-1.6
1,454,081	-		MMP_RS07675	0.16	+0.2
1,454,082	+		MMP_RS07675	0.16	-1.8
1,454,082	+		MMP_RS07675	0.16	-0.6
1,454,128	-		MMP_RS07675	0.20	+1.7
1,454,129	+		MMP_RS07675	0.20	+1.1
1,454,166	-		MMP_RS07675	0.22	+0.1
1,454,171	-		MMP_RS07675	0.23	-1.0
1,454,187	+		MMP_RS07675	0.24	+0.2
1,454,255	+		MMP_RS07675	0.29	-3.9
1,454,256	-		MMP_RS07675	0.29	-0.3
1,454,261	-		MMP_RS07675	0.29	-0.1
1,454,261	-		MMP_RS07675	0.29	+0.2
1,454,261	-		MMP_RS07675	0.29	-1.1
1,454,306	+		MMP_RS07675	0.33	+0.8
1,454,311	-		MMP_RS07675	0.33	+1.9
1,454,312	+		MMP_RS07675	0.33	+0.9
1,454,337	-		MMP_RS07675	0.35	+1.0
1,454,338	+		MMP_RS07675	0.35	+0.5
1,454,338	+		MMP_RS07675	0.35	-2.4
1,454,338	+		MMP_RS07675	0.35	-0.1
1,454,338	+		MMP_RS07675	0.35	+1.4
1,454,339	-		MMP_RS07675	0.35	-3.7
1,454,339	-		MMP_RS07675	0.35	+0.0
1,454,340	+		MMP_RS07675	0.35	+0.1
1,454,340	+		MMP_RS07675	0.35	+0.2
1,454,340	+		MMP_RS07675	0.35	+0.2
1,454,341	-		MMP_RS07675	0.35	-1.0
1,454,341	-		MMP_RS07675	0.35	-0.4
1,454,341	-		MMP_RS07675	0.35	+1.2
1,454,341	-		MMP_RS07675	0.35	+1.4
1,454,341	-		MMP_RS07675	0.35	-1.9
1,454,342	+		MMP_RS07675	0.35	-3.7
1,454,342	+		MMP_RS07675	0.35	-0.7
1,454,342	+		MMP_RS07675	0.35	-0.5
1,454,342	+		MMP_RS07675	0.35	+0.9
1,454,382	-		MMP_RS07675	0.38	+0.5
1,454,441	+		MMP_RS07675	0.43	+1.2
1,454,441	+		MMP_RS07675	0.43	+0.7
1,454,444	-		MMP_RS07675	0.43	+0.8
1,454,445	+		MMP_RS07675	0.43	+0.7
1,454,445	+		MMP_RS07675	0.43	-0.3
1,454,445	+		MMP_RS07675	0.43	-0.6
1,454,477	-		MMP_RS07675	0.46	-0.5
1,454,503	-		MMP_RS07675	0.47	-1.1
1,454,573	+		MMP_RS07675	0.53	-0.5
1,454,619	+		MMP_RS07675	0.56	+1.0
1,454,623	-		MMP_RS07675	0.56	+0.9
1,454,659	+		MMP_RS07675	0.59	-2.7
1,454,666	+		MMP_RS07675	0.60	-0.6
1,454,685	-		MMP_RS07675	0.61	-3.6
1,454,686	+		MMP_RS07675	0.61	+0.1
1,454,720	+		MMP_RS07675	0.64	-4.9
1,454,730	-		MMP_RS07675	0.64	-1.5
1,454,735	-		MMP_RS07675	0.65	-1.3
1,454,735	-		MMP_RS07675	0.65	-2.3
1,454,735	-		MMP_RS07675	0.65	-0.3
1,454,735	-		MMP_RS07675	0.65	-0.9
1,454,741	-		MMP_RS07675	0.65	+0.7
1,454,742	+		MMP_RS07675	0.65	+1.0
1,454,746	-		MMP_RS07675	0.66	+1.2
1,454,777	+		MMP_RS07675	0.68	+1.9
1,454,781	-		MMP_RS07675	0.68	-1.4
1,454,781	-		MMP_RS07675	0.68	-1.0
1,454,833	+		MMP_RS07675	0.72	-0.3
1,454,834	-		MMP_RS07675	0.72	-0.6
1,454,843	+		MMP_RS07675	0.73	+0.3
1,454,895	-		MMP_RS07675	0.77	-2.2
1,454,941	+		MMP_RS07675	0.80	+1.3
1,454,944	+		MMP_RS07675	0.80	+1.5
1,455,005	+		MMP_RS07675	0.85	-0.3
1,455,050	+		MMP_RS07675	0.88	+1.0
1,455,276	+				+0.7
1,455,344	+				-3.1
1,455,588	-		MMP_RS07680	0.46	-0.3
1,455,795	-		MMP_RS07680	0.81	-2.2
1,455,817	-		MMP_RS07680	0.84	+0.4
1,455,847	-		MMP_RS07680	0.89	-2.0
1,455,847	-		MMP_RS07680	0.89	-2.4
1,455,914	+				-1.2
1,455,914	+				+1.0
1,456,072	+		MMP_RS07685	0.15	-2.0
1,456,076	+		MMP_RS07685	0.15	+1.1
1,456,158	-		MMP_RS07685	0.23	-0.2
1,456,159	+		MMP_RS07685	0.24	+1.6