Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07525

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
1,424,268	-				-1.0
1,424,268	-				-0.7
1,424,345	+				-2.6
1,424,463	+				-0.3
1,424,543	+				-0.2
1,424,946	-				-0.2
1,424,973	-				-0.4
1,425,060	-				-0.2
1,425,060	-				-1.8
1,425,068	+				-1.8
1,425,105	-				-0.9
1,425,105	-				-1.3
1,425,105	-				-0.9
1,425,107	-				-2.7
1,425,180	+				-1.5
1,425,187	+				-0.3
1,425,198	-				-3.2
1,425,203	+				-0.3
1,425,203	+				-3.6
1,425,221	-				-1.8
1,425,225	-				-0.9
1,425,225	-				-4.1
1,425,225	-				-0.8
1,425,225	-				-2.4
1,425,226	+				-0.0
1,425,226	+				-1.5
1,425,226	+				+0.1
1,425,226	+				-0.8
1,425,315	-				-1.9
1,425,372	-		MMP_RS07525	0.12	-2.7
1,425,479	-		MMP_RS07525	0.21	-3.4
1,425,587	-		MMP_RS07525	0.31	-1.6
1,425,588	+		MMP_RS07525	0.31	-1.0
1,425,591	+		MMP_RS07525	0.31	-2.5
1,425,854	-		MMP_RS07525	0.53	-0.8
1,425,945	-		MMP_RS07525	0.61	-0.2
1,425,946	+		MMP_RS07525	0.61	-1.2
1,425,961	+		MMP_RS07525	0.62	-0.8
1,426,004	-		MMP_RS07525	0.66	-1.9
1,426,051	-		MMP_RS07525	0.70	-0.4
1,426,095	-		MMP_RS07525	0.74	-0.0
1,426,095	-		MMP_RS07525	0.74	-2.7
1,426,105	+		MMP_RS07525	0.74	-1.5
1,426,131	-		MMP_RS07525	0.77	-3.4
1,426,219	-		MMP_RS07525	0.84	-0.5
1,426,325	-				+1.3
1,426,325	-				+0.5
1,426,518	-		MMP_RS07530	0.24	-0.7
1,426,518	-		MMP_RS07530	0.24	+1.2
1,426,519	+		MMP_RS07530	0.24	+0.8
1,426,519	+		MMP_RS07530	0.24	-2.5
1,426,519	+		MMP_RS07530	0.24	+0.9
1,426,519	+		MMP_RS07530	0.24	-2.9
1,426,522	-		MMP_RS07530	0.25	+0.0
1,426,523	+		MMP_RS07530	0.25	+0.1
1,426,523	+		MMP_RS07530	0.25	-0.9
1,426,523	+		MMP_RS07530	0.25	+0.3
1,426,523	+		MMP_RS07530	0.25	+0.0
1,426,523	+		MMP_RS07530	0.25	+0.4
1,426,526	+		MMP_RS07530	0.26	-1.5
1,426,526	+		MMP_RS07530	0.26	+1.2
1,426,526	+		MMP_RS07530	0.26	-2.5
1,426,594	-		MMP_RS07530	0.40	-0.1
1,426,743	-		MMP_RS07530	0.71	-0.3
1,426,744	+		MMP_RS07530	0.71	+1.1
1,426,886	-				+0.2
1,426,947	-				-0.7
1,427,029	-		MMP_RS07535	0.16	-0.5
1,427,053	+		MMP_RS07535	0.19	-1.4
1,427,228	-		MMP_RS07535	0.42	+0.6
1,427,229	+		MMP_RS07535	0.43	-0.4
1,427,256	+		MMP_RS07535	0.46	+0.7
1,427,380	+		MMP_RS07535	0.62	-3.6
1,427,381	-		MMP_RS07535	0.63	+0.5
1,427,381	-		MMP_RS07535	0.63	-0.2
1,427,382	+		MMP_RS07535	0.63	-1.3