Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06925 and MMP_RS06930 are separated by 16 nucleotides MMP_RS06930 and MMP_RS06935 are separated by 9 nucleotides MMP_RS06935 and MMP_RS06940 are separated by 4 nucleotides MMP_RS06940 and MMP_RS06945 are separated by 16 nucleotides
MMP_RS06925: MMP_RS06925 - ribonuclease VapC4, at 1,324,077 to 1,324,472
_RS06925
MMP_RS06930: MMP_RS06930 - MBL fold metallo-hydrolase, at 1,324,489 to 1,325,289
_RS06930
MMP_RS06935: MMP_RS06935 - protease complex subunit PrcB family protein, at 1,325,299 to 1,325,775
_RS06935
MMP_RS06940: MMP_RS06940 - polyprenyl diphosphate synthase, at 1,325,780 to 1,326,574
_RS06940
MMP_RS06945: MMP_RS06945 - methanogenesis marker protein Mmp4/MtxX, at 1,326,591 to 1,327,322
_RS06945
Position (kb) 1325
1326 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1324.364 kb on + strand, within MMP_RS06925 at 1324.461 kb on - strand at 1324.466 kb on + strand at 1324.497 kb on - strand at 1324.521 kb on - strand at 1324.587 kb on - strand, within MMP_RS06930 at 1324.588 kb on + strand, within MMP_RS06930 at 1324.590 kb on + strand, within MMP_RS06930 at 1324.590 kb on + strand, within MMP_RS06930 at 1324.634 kb on - strand, within MMP_RS06930 at 1324.675 kb on - strand, within MMP_RS06930 at 1324.684 kb on - strand, within MMP_RS06930 at 1324.685 kb on + strand, within MMP_RS06930 at 1324.777 kb on - strand, within MMP_RS06930 at 1324.924 kb on - strand, within MMP_RS06930 at 1324.925 kb on + strand, within MMP_RS06930 at 1325.080 kb on + strand, within MMP_RS06930 at 1325.081 kb on - strand, within MMP_RS06930 at 1325.082 kb on + strand, within MMP_RS06930 at 1325.082 kb on + strand, within MMP_RS06930 at 1325.082 kb on + strand, within MMP_RS06930 at 1325.103 kb on - strand, within MMP_RS06930 at 1325.103 kb on - strand, within MMP_RS06930 at 1325.107 kb on + strand, within MMP_RS06930 at 1325.107 kb on + strand, within MMP_RS06930 at 1325.107 kb on + strand, within MMP_RS06930 at 1325.110 kb on - strand, within MMP_RS06930 at 1325.141 kb on + strand, within MMP_RS06930 at 1325.241 kb on - strand at 1325.490 kb on + strand, within MMP_RS06935 at 1325.540 kb on - strand, within MMP_RS06935 at 1325.540 kb on - strand, within MMP_RS06935 at 1325.541 kb on + strand, within MMP_RS06935 at 1325.541 kb on + strand, within MMP_RS06935 at 1325.541 kb on + strand, within MMP_RS06935 at 1325.632 kb on - strand, within MMP_RS06935 at 1325.632 kb on - strand, within MMP_RS06935 at 1325.668 kb on - strand, within MMP_RS06935 at 1325.692 kb on + strand, within MMP_RS06935 at 1325.760 kb on - strand at 1325.768 kb on - strand at 1325.859 kb on - strand at 1325.859 kb on - strand at 1325.860 kb on + strand, within MMP_RS06940 at 1325.860 kb on + strand, within MMP_RS06940 at 1325.877 kb on + strand, within MMP_RS06940 at 1325.917 kb on - strand, within MMP_RS06940 at 1326.284 kb on - strand, within MMP_RS06940 at 1326.285 kb on + strand, within MMP_RS06940 at 1326.334 kb on - strand, within MMP_RS06940 at 1326.337 kb on - strand, within MMP_RS06940 at 1326.370 kb on - strand, within MMP_RS06940 at 1326.657 kb on + strand at 1326.660 kb on - strand at 1326.663 kb on + strand at 1326.734 kb on - strand at 1326.742 kb on + strand at 1326.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 1,324,364 + MMP_RS06925 0.72 -1.5 1,324,461 - +1.9 1,324,466 + -0.1 1,324,497 - +0.4 1,324,521 - +0.2 1,324,587 - MMP_RS06930 0.12 -1.5 1,324,588 + MMP_RS06930 0.12 -0.5 1,324,590 + MMP_RS06930 0.13 -1.3 1,324,590 + MMP_RS06930 0.13 -0.4 1,324,634 - MMP_RS06930 0.18 -3.2 1,324,675 - MMP_RS06930 0.23 -1.7 1,324,684 - MMP_RS06930 0.24 +0.5 1,324,685 + MMP_RS06930 0.24 -0.5 1,324,777 - MMP_RS06930 0.36 -0.6 1,324,924 - MMP_RS06930 0.54 -0.8 1,324,925 + MMP_RS06930 0.54 -0.1 1,325,080 + MMP_RS06930 0.74 -1.3 1,325,081 - MMP_RS06930 0.74 -0.0 1,325,082 + MMP_RS06930 0.74 -0.5 1,325,082 + MMP_RS06930 0.74 -0.9 1,325,082 + MMP_RS06930 0.74 -4.5 1,325,103 - MMP_RS06930 0.77 -1.8 1,325,103 - MMP_RS06930 0.77 +0.3 1,325,107 + MMP_RS06930 0.77 +0.5 1,325,107 + MMP_RS06930 0.77 +0.1 1,325,107 + MMP_RS06930 0.77 +0.4 1,325,110 - MMP_RS06930 0.78 -0.8 1,325,141 + MMP_RS06930 0.81 -1.9 1,325,241 - -1.4 1,325,490 + MMP_RS06935 0.40 -0.6 1,325,540 - MMP_RS06935 0.51 +0.4 1,325,540 - MMP_RS06935 0.51 +0.5 1,325,541 + MMP_RS06935 0.51 -0.9 1,325,541 + MMP_RS06935 0.51 -1.3 1,325,541 + MMP_RS06935 0.51 +0.0 1,325,632 - MMP_RS06935 0.70 -2.3 1,325,632 - MMP_RS06935 0.70 -3.3 1,325,668 - MMP_RS06935 0.77 -4.6 1,325,692 + MMP_RS06935 0.82 +0.3 1,325,760 - -0.6 1,325,768 - +2.4 1,325,859 - +1.2 1,325,859 - -1.3 1,325,860 + MMP_RS06940 0.10 +0.5 1,325,860 + MMP_RS06940 0.10 -4.2 1,325,877 + MMP_RS06940 0.12 -0.6 1,325,917 - MMP_RS06940 0.17 +1.4 1,326,284 - MMP_RS06940 0.63 -1.7 1,326,285 + MMP_RS06940 0.64 +0.6 1,326,334 - MMP_RS06940 0.70 +1.2 1,326,337 - MMP_RS06940 0.70 +0.9 1,326,370 - MMP_RS06940 0.74 +2.2 1,326,657 + -1.4 1,326,660 - +0.4 1,326,663 + -0.3 1,326,734 - +0.1 1,326,742 + -2.9 1,326,774 - -2.5
Or see this region's nucleotide sequence