Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06555

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
1,258,908	-		MMP_RS06550	0.46	+1.1
1,258,937	+		MMP_RS06550	0.47	+0.9
1,259,003	-		MMP_RS06550	0.51	+0.8
1,259,449	-		MMP_RS06550	0.78	+1.0
1,259,611	-		MMP_RS06550	0.88	+1.6
1,259,660	+				+0.6
1,259,660	+				-1.9
1,259,846	-				+1.2
1,259,860	-				+1.5
1,259,863	+				+1.6
1,259,864	-				+0.8
1,259,869	+				-0.1
1,259,907	+				-0.0
1,259,998	-		MMP_RS06555	0.24	-0.3
1,260,141	-		MMP_RS06555	0.49	-0.6
1,260,422	+				+1.4
1,260,422	+				-0.5
1,260,451	+				+0.1
1,260,456	+				-0.9
1,260,460	-				-1.0
1,260,463	+				+0.6
1,260,501	-				+1.5
1,260,501	-				+0.7
1,260,502	+				-2.9
1,260,522	+				+0.5
1,260,535	+				+1.5
1,260,535	+				+0.8
1,260,535	+				+0.4
1,260,549	-				-0.2
1,260,550	+				+0.9
1,260,551	-				+2.0
1,260,552	+				-1.6
1,260,552	+				+1.8
1,260,552	+				+0.4
1,260,564	+				-0.7
1,260,611	-				+0.9
1,260,612	+				+0.6
1,260,612	+				+1.4
1,260,612	+				+1.8
1,260,645	-				-0.3
1,260,648	+				-1.2
1,260,733	-		MMP_RS06560	0.11	-0.7
1,260,733	-		MMP_RS06560	0.11	-1.0
1,260,734	+		MMP_RS06560	0.11	+0.4
1,260,768	-		MMP_RS06560	0.19	+0.3
1,260,768	-		MMP_RS06560	0.19	+0.7
1,260,768	-		MMP_RS06560	0.19	+0.2
1,260,769	+		MMP_RS06560	0.19	-1.9
1,260,779	+		MMP_RS06560	0.21	+1.9
1,260,779	+		MMP_RS06560	0.21	-1.2
1,260,829	-		MMP_RS06560	0.32	-0.2
1,260,829	-		MMP_RS06560	0.32	+0.5
1,260,829	-		MMP_RS06560	0.32	+0.7
1,260,863	-		MMP_RS06560	0.40	+0.3
1,260,864	+		MMP_RS06560	0.40	+0.7
1,260,864	+		MMP_RS06560	0.40	+1.4
1,260,901	-		MMP_RS06560	0.49	-0.5
1,261,054	-		MMP_RS06560	0.83	-2.2
1,261,086	-				-4.3