Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05980

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
1,144,544	+		MMP_RS05965	0.69	+1.0
1,144,580	+		MMP_RS05965	0.81	-0.5
1,144,580	+		MMP_RS05965	0.81	+0.8
1,144,653	+				-1.3
1,144,785	+		MMP_RS05970	0.37	-0.5
1,144,829	-		MMP_RS05970	0.49	-1.4
1,144,830	+		MMP_RS05970	0.49	+1.1
1,144,853	-		MMP_RS05970	0.56	+1.0
1,145,108	-		MMP_RS05975	0.29	+1.6
1,145,288	-				+0.9
1,145,292	+				+0.2
1,145,303	+				-0.6
1,145,319	-				-0.4
1,145,319	-				-1.4
1,145,320	+				-1.8
1,145,357	-				-0.5
1,145,357	-				-2.0
1,145,357	-				-3.4
1,145,358	+				-0.2
1,145,358	+				+0.1
1,145,362	+				-0.3
1,145,380	-		MMP_RS05980	0.12	+0.9
1,145,380	-		MMP_RS05980	0.12	-1.1
1,145,447	-		MMP_RS05980	0.25	+0.5
1,145,539	+		MMP_RS05980	0.42	-1.0
1,145,567	-		MMP_RS05980	0.48	-1.7
1,145,568	+		MMP_RS05980	0.48	-1.7
1,145,568	+		MMP_RS05980	0.48	+0.1
1,145,635	+		MMP_RS05980	0.61	-0.4
1,145,648	-		MMP_RS05980	0.64	-2.2
1,145,676	+		MMP_RS05980	0.69	-1.5
1,145,688	+		MMP_RS05980	0.71	+0.4
1,145,745	+		MMP_RS05980	0.82	+0.2
1,145,765	+		MMP_RS05980	0.86	+0.5
1,145,765	+		MMP_RS05980	0.86	-0.1
1,145,765	+		MMP_RS05980	0.86	-0.7
1,145,843	+				-5.2
1,145,859	+				+1.7
1,145,961	+		MMP_RS05985	0.57	+0.7
1,145,961	+		MMP_RS05985	0.57	-1.4
1,145,961	+		MMP_RS05985	0.57	+1.3
1,146,039	+				-0.8
1,146,041	+				+0.3
1,146,052	-				+0.3
1,146,053	+				+0.7
1,146,073	-				+1.3
1,146,105	-				+0.2
1,146,292	-		MMP_RS05990	0.61	-1.6
1,146,312	+		MMP_RS05990	0.67	-0.1
1,146,335	-		MMP_RS05990	0.73	+0.6
1,146,350	+		MMP_RS05990	0.77	-0.9
1,146,377	-		MMP_RS05990	0.85	+2.5
1,146,432	-				+0.1
1,146,435	-				-0.2
1,146,435	-				-1.6
1,146,461	-				+0.4
1,146,462	+				+1.8
1,146,573	+				-0.4
1,146,578	+				-1.2
1,146,603	-		MMP_RS05995	0.12	-0.7
1,146,760	+		MMP_RS05995	0.25	+0.7
1,146,797	-		MMP_RS05995	0.28	+0.2
1,146,798	+		MMP_RS05995	0.28	-2.1
1,146,820	-		MMP_RS05995	0.30	-0.6
1,146,823	+		MMP_RS05995	0.31	+1.4