Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05955

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
1,141,862	-		MMP_RS05950	0.37	-0.1
1,141,927	-		MMP_RS05950	0.43	-1.0
1,141,941	-		MMP_RS05950	0.44	+0.8
1,142,042	-		MMP_RS05950	0.53	+0.8
1,142,063	+		MMP_RS05950	0.55	+0.4
1,142,089	+		MMP_RS05950	0.57	+0.2
1,142,188	+		MMP_RS05950	0.66	+0.5
1,142,251	+		MMP_RS05950	0.72	-0.3
1,142,401	+		MMP_RS05950	0.85	+1.4
1,142,466	-				-2.5
1,142,504	+				+1.3
1,142,533	+				+0.3
1,142,568	+				+0.4
1,142,619	+				+0.3
1,142,636	-				+0.3
1,142,650	+				-1.3
1,142,659	+				-0.0
1,142,665	-				-0.9
1,142,675	-				-2.2
1,142,679	-				+1.0
1,142,679	-				+1.6
1,142,679	-				+0.9
1,142,680	+				-2.1
1,142,688	+				+1.8
1,142,723	+				+1.6
1,142,725	-				-0.1
1,142,727	-				-0.5
1,142,729	-				+0.0
1,142,729	-				-1.4
1,142,730	+				-1.3
1,142,730	+				-0.5
1,142,746	-				+1.2
1,142,746	-				-0.5
1,142,747	+				+2.1
1,142,747	+				-0.1
1,142,747	+				+1.1
1,142,747	+				-1.5
1,142,748	-				+0.7
1,142,748	-				+1.1
1,142,749	+				+0.8
1,142,750	-				+1.4
1,142,751	+				-0.3
1,142,777	-				-1.8
1,143,032	-		MMP_RS05955	0.40	-0.8
1,143,098	+		MMP_RS05955	0.52	-3.7
1,143,486	+		MMP_RS05960	0.11	+1.4
1,143,675	+		MMP_RS05960	0.31	+0.8
1,143,709	-		MMP_RS05960	0.35	+0.0
1,143,742	+		MMP_RS05960	0.39	+1.6
1,143,744	+		MMP_RS05960	0.39	-0.8
1,143,769	-		MMP_RS05960	0.42	+0.4
1,143,778	-		MMP_RS05960	0.43	+1.4
1,143,779	+		MMP_RS05960	0.43	+1.3
1,143,783	-		MMP_RS05960	0.43	+1.0
1,143,856	+		MMP_RS05960	0.51	-1.6
1,143,871	-		MMP_RS05960	0.53	-3.3
1,143,871	-		MMP_RS05960	0.53	-2.1
1,143,886	-		MMP_RS05960	0.55	+1.9
1,143,886	-		MMP_RS05960	0.55	-1.3
1,143,887	+		MMP_RS05960	0.55	+1.1
1,143,887	+		MMP_RS05960	0.55	+1.4
1,143,958	-		MMP_RS05960	0.63	-2.0
1,143,960	-		MMP_RS05960	0.63	+0.3
1,143,960	-		MMP_RS05960	0.63	-0.9
1,143,961	+		MMP_RS05960	0.63	-0.6
1,143,961	+		MMP_RS05960	0.63	+1.7
1,143,963	-		MMP_RS05960	0.63	+1.1
1,143,964	+		MMP_RS05960	0.63	-3.2
1,143,977	-		MMP_RS05960	0.65	-1.4
1,144,193	+		MMP_RS05960	0.89	-2.3
1,144,293	-				+1.9