Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05945

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
1,140,110	+				+2.6
1,140,130	+				-0.2
1,140,259	-				-2.1
1,140,262	+				+1.0
1,140,335	-		MMP_RS05940	0.21	-0.4
1,140,336	+		MMP_RS05940	0.21	-0.0
1,140,462	-		MMP_RS05940	0.40	-2.2
1,140,632	+		MMP_RS05940	0.67	+0.6
1,140,686	+		MMP_RS05940	0.75	+1.2
1,140,697	+		MMP_RS05940	0.77	-2.0
1,140,697	+		MMP_RS05940	0.77	+1.2
1,140,781	+		MMP_RS05940	0.90	-1.7
1,140,828	-				+0.1
1,140,831	-				-4.7
1,140,885	+				-0.9
1,140,885	+				+0.6
1,140,886	-				-0.2
1,140,967	+				-0.1
1,140,967	+				+0.9
1,140,967	+				+0.4
1,140,967	+				+1.3
1,140,971	+				-0.0
1,141,146	+		MMP_RS05945	0.34	+0.0
1,141,301	+		MMP_RS05945	0.77	-0.2
1,141,302	-		MMP_RS05945	0.77	-0.2
1,141,317	+		MMP_RS05945	0.81	-1.8
1,141,317	+		MMP_RS05945	0.81	+0.7
1,141,377	+				+1.9
1,141,384	-				+0.8
1,141,385	+				-0.9
1,141,418	-				-0.6
1,141,418	-				-1.6
1,141,418	-				+0.8
1,141,421	-				+0.8
1,141,421	-				+0.3
1,141,421	-				+1.1
1,141,422	+				-0.6
1,141,423	-				+1.3
1,141,424	+				+0.2
1,141,425	-				-1.3
1,141,425	-				+0.0
1,141,425	-				-1.3
1,141,425	-				-1.9
1,141,425	-				-1.2
1,141,426	+				+1.4
1,141,426	+				-1.1
1,141,426	+				+0.6
1,141,429	-				-2.9
1,141,429	-				+1.5
1,141,430	+				-0.2
1,141,432	-				-1.0
1,141,486	+				-1.7
1,141,491	-				+0.8
1,141,610	+		MMP_RS05950	0.15	-0.5
1,141,640	-		MMP_RS05950	0.17	-1.0
1,141,716	+		MMP_RS05950	0.24	+1.6
1,141,716	+		MMP_RS05950	0.24	+1.8
1,141,762	-		MMP_RS05950	0.28	+1.6
1,141,798	+		MMP_RS05950	0.31	-2.9
1,141,862	-		MMP_RS05950	0.37	-0.1
1,141,927	-		MMP_RS05950	0.43	-1.0
1,141,941	-		MMP_RS05950	0.44	+0.8
1,142,042	-		MMP_RS05950	0.53	+0.8
1,142,063	+		MMP_RS05950	0.55	+0.4
1,142,089	+		MMP_RS05950	0.57	+0.2
1,142,188	+		MMP_RS05950	0.66	+0.5
1,142,251	+		MMP_RS05950	0.72	-0.3