Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05660

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
1,087,469	+				-0.5
1,087,557	+				-1.0
1,087,557	+				-0.3
1,087,858	+				+0.5
1,087,918	-				-1.1
1,088,210	-				-1.1
1,088,243	-				+0.5
1,088,244	+				-0.2
1,088,245	-				+0.4
1,088,245	-				+1.4
1,088,246	+				-1.0
1,088,246	+				-0.8
1,088,247	-				+0.4
1,088,247	-				-0.0
1,088,248	+				+0.0
1,088,248	+				-0.5
1,088,283	+				-2.6
1,088,286	+				-1.7
1,088,418	-				+1.1
1,088,418	-				+0.7
1,088,419	+				-1.9
1,088,452	+				-0.5
1,088,492	+		MMP_RS05660	0.10	+1.1
1,088,516	+		MMP_RS05660	0.13	-0.6
1,088,536	-		MMP_RS05660	0.16	-2.7
1,088,598	+		MMP_RS05660	0.23	-0.3
1,088,758	-		MMP_RS05660	0.42	-0.6
1,089,097	+		MMP_RS05660	0.82	-4.5
1,089,097	+		MMP_RS05660	0.82	-2.2
1,089,097	+		MMP_RS05660	0.82	-2.9
1,089,110	-		MMP_RS05660	0.84	+1.1
1,089,129	-		MMP_RS05660	0.86	-0.8
1,089,190	+				-0.5
1,089,216	-				+1.6
1,089,217	+				-0.2
1,089,229	-				+0.4
1,089,230	+				+0.4
1,089,243	+				-0.9
1,089,247	-				+1.3
1,089,248	+				-1.2
1,089,253	+				+0.1
1,089,313	+				+2.4
1,089,634	-		MMP_RS05665	0.35	-0.2
1,089,783	-		MMP_RS05665	0.52	-1.8
1,089,802	-		MMP_RS05665	0.54	-3.8
1,089,808	+		MMP_RS05665	0.55	+0.4
1,090,054	-		MMP_RS05665	0.83	+1.5
1,090,062	-		MMP_RS05665	0.84	-0.6
1,090,155	-				+1.3
1,090,167	+				+0.3