Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05655

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
1,084,941	-		MMP_RS05645	0.53	-1.4
1,084,942	+		MMP_RS05645	0.53	+1.0
1,084,942	+		MMP_RS05645	0.53	-0.3
1,084,942	+		MMP_RS05645	0.53	+1.7
1,084,942	+		MMP_RS05645	0.53	+0.6
1,084,978	-		MMP_RS05645	0.57	+1.8
1,085,158	-		MMP_RS05645	0.77	+0.8
1,085,166	+		MMP_RS05645	0.77	-0.2
1,085,212	-		MMP_RS05645	0.83	-1.1
1,085,215	-		MMP_RS05645	0.83	-4.1
1,085,349	-				+0.5
1,085,349	-				+1.3
1,085,349	-				+0.9
1,085,350	+				+0.8
1,085,350	+				+0.9
1,085,362	-				-2.0
1,085,552	+				-1.7
1,085,626	+				-1.6
1,085,712	-				+0.6
1,085,782	+				-0.4
1,085,790	-				-1.0
1,086,350	+				+0.5
1,086,907	-				-0.2
1,087,211	+				-1.4
1,087,469	+				-0.5
1,087,557	+				-1.0
1,087,557	+				-0.3
1,087,858	+				+0.5
1,087,918	-				-1.1
1,088,210	-				-1.1
1,088,243	-				+0.5
1,088,244	+				-0.2
1,088,245	-				+0.4
1,088,245	-				+1.4
1,088,246	+				-1.0
1,088,246	+				-0.8
1,088,247	-				+0.4
1,088,247	-				-0.0
1,088,248	+				+0.0
1,088,248	+				-0.5
1,088,283	+				-2.6
1,088,286	+				-1.7
1,088,418	-				+1.1
1,088,418	-				+0.7
1,088,419	+				-1.9
1,088,452	+				-0.5
1,088,492	+		MMP_RS05660	0.10	+1.1
1,088,516	+		MMP_RS05660	0.13	-0.6
1,088,536	-		MMP_RS05660	0.16	-2.7
1,088,598	+		MMP_RS05660	0.23	-0.3
1,088,758	-		MMP_RS05660	0.42	-0.6
1,089,097	+		MMP_RS05660	0.82	-4.5
1,089,097	+		MMP_RS05660	0.82	-2.2
1,089,097	+		MMP_RS05660	0.82	-2.9
1,089,110	-		MMP_RS05660	0.84	+1.1
1,089,129	-		MMP_RS05660	0.86	-0.8