Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05220 and MMP_RS05225 are separated by 24 nucleotides MMP_RS05225 and MMP_RS05230 are separated by 110 nucleotides
MMP_RS05220: MMP_RS05220 - dihydroorotase, at 993,042 to 994,298
_RS05220
MMP_RS05225: MMP_RS05225 - RluA family pseudouridine synthase, at 994,323 to 995,216
_RS05225
MMP_RS05230: MMP_RS05230 - glutamate--tRNA ligase, at 995,327 to 996,994
_RS05230
Position (kb) 994
995
996 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 993.726 kb on + strand at 993.744 kb on + strand at 993.747 kb on - strand at 993.892 kb on - strand at 994.352 kb on - strand at 994.353 kb on + strand at 994.374 kb on + strand at 994.439 kb on - strand, within MMP_RS05225 at 994.439 kb on - strand, within MMP_RS05225 at 994.451 kb on - strand, within MMP_RS05225 at 994.451 kb on - strand, within MMP_RS05225 at 994.485 kb on + strand, within MMP_RS05225 at 994.504 kb on + strand, within MMP_RS05225 at 994.536 kb on + strand, within MMP_RS05225 at 994.539 kb on - strand, within MMP_RS05225 at 994.539 kb on - strand, within MMP_RS05225 at 994.539 kb on - strand, within MMP_RS05225 at 994.540 kb on + strand, within MMP_RS05225 at 994.588 kb on - strand, within MMP_RS05225 at 994.592 kb on - strand, within MMP_RS05225 at 994.699 kb on + strand, within MMP_RS05225 at 994.709 kb on - strand, within MMP_RS05225 at 994.709 kb on - strand, within MMP_RS05225 at 994.710 kb on + strand, within MMP_RS05225 at 994.712 kb on + strand, within MMP_RS05225 at 994.712 kb on + strand, within MMP_RS05225 at 994.712 kb on + strand, within MMP_RS05225 at 994.713 kb on - strand, within MMP_RS05225 at 994.765 kb on - strand, within MMP_RS05225 at 994.766 kb on + strand, within MMP_RS05225 at 994.932 kb on + strand, within MMP_RS05225 at 994.960 kb on - strand, within MMP_RS05225 at 994.971 kb on - strand, within MMP_RS05225 at 994.972 kb on + strand, within MMP_RS05225 at 995.218 kb on - strand at 995.219 kb on + strand at 995.219 kb on + strand at 995.259 kb on - strand at 995.274 kb on - strand at 995.320 kb on - strand at 995.322 kb on - strand at 995.339 kb on - strand at 995.353 kb on + strand at 995.353 kb on + strand at 995.356 kb on - strand at 995.670 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 993,726 + -1.7 993,744 + +0.4 993,747 - -0.9 993,892 - -0.3 994,352 - -2.7 994,353 + -0.3 994,374 + +0.8 994,439 - MMP_RS05225 0.13 +0.1 994,439 - MMP_RS05225 0.13 +0.4 994,451 - MMP_RS05225 0.14 -0.5 994,451 - MMP_RS05225 0.14 -1.3 994,485 + MMP_RS05225 0.18 +0.9 994,504 + MMP_RS05225 0.20 -3.4 994,536 + MMP_RS05225 0.24 +1.7 994,539 - MMP_RS05225 0.24 +0.9 994,539 - MMP_RS05225 0.24 -4.0 994,539 - MMP_RS05225 0.24 +1.2 994,540 + MMP_RS05225 0.24 +1.5 994,588 - MMP_RS05225 0.30 +1.7 994,592 - MMP_RS05225 0.30 +0.0 994,699 + MMP_RS05225 0.42 +1.1 994,709 - MMP_RS05225 0.43 +0.8 994,709 - MMP_RS05225 0.43 -0.1 994,710 + MMP_RS05225 0.43 +0.7 994,712 + MMP_RS05225 0.44 -3.1 994,712 + MMP_RS05225 0.44 +0.9 994,712 + MMP_RS05225 0.44 +0.4 994,713 - MMP_RS05225 0.44 +2.0 994,765 - MMP_RS05225 0.49 +0.7 994,766 + MMP_RS05225 0.50 +0.6 994,932 + MMP_RS05225 0.68 -1.7 994,960 - MMP_RS05225 0.71 -0.5 994,971 - MMP_RS05225 0.72 -1.0 994,972 + MMP_RS05225 0.73 +1.9 995,218 - +0.2 995,219 + +1.2 995,219 + +1.2 995,259 - +0.3 995,274 - +0.0 995,320 - -0.7 995,322 - -0.6 995,339 - +0.4 995,353 + -1.7 995,353 + -2.0 995,356 - +0.7 995,670 + -2.1
Or see this region's nucleotide sequence