Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05045

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05035 and MMP_RS05040 are separated by 77 nucleotidesMMP_RS05040 and MMP_RS05045 overlap by 14 nucleotidesMMP_RS05045 and MMP_RS05050 are separated by 51 nucleotides MMP_RS05035: MMP_RS05035 - hypothetical protein, at 959,495 to 959,908 _RS05035 MMP_RS05040: MMP_RS05040 - permease, at 959,986 to 960,843 _RS05040 MMP_RS05045: MMP_RS05045 - 4Fe-4S binding protein, at 960,830 to 961,489 _RS05045 MMP_RS05050: MMP_RS05050 - substrate-binding domain-containing protein, at 961,541 to 962,392 _RS05050 Position (kb) 960 961 962Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 959.911 kb on - strandat 959.925 kb on + strandat 959.935 kb on - strandat 959.939 kb on + strandat 959.952 kb on - strandat 959.952 kb on - strandat 959.952 kb on - strandat 959.952 kb on - strandat 959.953 kb on + strandat 959.953 kb on + strandat 959.953 kb on + strandat 959.953 kb on + strandat 959.953 kb on + strandat 959.954 kb on - strandat 959.956 kb on - strandat 959.956 kb on - strandat 959.957 kb on + strandat 959.957 kb on + strandat 959.997 kb on - strandat 959.997 kb on - strandat 959.998 kb on + strandat 959.998 kb on + strandat 959.998 kb on + strandat 960.030 kb on - strandat 960.030 kb on - strandat 960.035 kb on + strandat 960.048 kb on + strandat 960.107 kb on + strand, within MMP_RS05040at 960.107 kb on + strand, within MMP_RS05040at 960.139 kb on + strand, within MMP_RS05040at 960.174 kb on - strand, within MMP_RS05040at 960.175 kb on + strand, within MMP_RS05040at 960.175 kb on + strand, within MMP_RS05040at 960.175 kb on + strand, within MMP_RS05040at 960.208 kb on - strand, within MMP_RS05040at 960.208 kb on - strand, within MMP_RS05040at 960.209 kb on + strand, within MMP_RS05040at 960.210 kb on - strand, within MMP_RS05040at 960.210 kb on - strand, within MMP_RS05040at 960.239 kb on - strand, within MMP_RS05040at 960.246 kb on - strand, within MMP_RS05040at 960.246 kb on - strand, within MMP_RS05040at 960.267 kb on + strand, within MMP_RS05040at 960.294 kb on + strand, within MMP_RS05040at 960.473 kb on + strand, within MMP_RS05040at 960.512 kb on - strand, within MMP_RS05040at 960.512 kb on - strand, within MMP_RS05040at 960.557 kb on + strand, within MMP_RS05040at 960.558 kb on - strand, within MMP_RS05040at 960.571 kb on + strand, within MMP_RS05040at 960.571 kb on + strand, within MMP_RS05040at 960.667 kb on + strand, within MMP_RS05040at 960.667 kb on + strand, within MMP_RS05040at 960.697 kb on + strand, within MMP_RS05040at 960.743 kb on - strand, within MMP_RS05040at 960.743 kb on - strand, within MMP_RS05040at 960.744 kb on + strand, within MMP_RS05040at 960.769 kb on - strandat 960.773 kb on - strandat 960.774 kb on + strandat 960.819 kb on - strandat 960.931 kb on + strand, within MMP_RS05045at 960.934 kb on - strand, within MMP_RS05045at 960.935 kb on + strand, within MMP_RS05045at 960.935 kb on + strand, within MMP_RS05045at 960.935 kb on + strand, within MMP_RS05045at 960.956 kb on - strand, within MMP_RS05045at 960.963 kb on + strand, within MMP_RS05045at 960.986 kb on - strand, within MMP_RS05045at 960.986 kb on - strand, within MMP_RS05045at 960.986 kb on - strand, within MMP_RS05045at 960.986 kb on - strand, within MMP_RS05045at 960.986 kb on - strand, within MMP_RS05045at 960.987 kb on + strand, within MMP_RS05045at 960.987 kb on + strand, within MMP_RS05045at 960.987 kb on + strand, within MMP_RS05045at 960.987 kb on + strand, within MMP_RS05045at 960.987 kb on + strand, within MMP_RS05045at 960.987 kb on + strand, within MMP_RS05045at 960.987 kb on + strand, within MMP_RS05045at 960.987 kb on + strand, within MMP_RS05045at 960.987 kb on + strand, within MMP_RS05045at 960.989 kb on + strand, within MMP_RS05045at 960.989 kb on + strand, within MMP_RS05045at 960.999 kb on - strand, within MMP_RS05045at 961.002 kb on - strand, within MMP_RS05045at 961.003 kb on + strand, within MMP_RS05045at 961.146 kb on + strand, within MMP_RS05045at 961.181 kb on + strand, within MMP_RS05045at 961.185 kb on + strand, within MMP_RS05045at 961.203 kb on - strand, within MMP_RS05045at 961.217 kb on - strand, within MMP_RS05045at 961.262 kb on + strand, within MMP_RS05045at 961.325 kb on - strand, within MMP_RS05045at 961.326 kb on + strand, within MMP_RS05045at 961.365 kb on - strand, within MMP_RS05045at 961.381 kb on - strand, within MMP_RS05045at 961.382 kb on + strand, within MMP_RS05045at 961.382 kb on + strand, within MMP_RS05045at 961.382 kb on + strand, within MMP_RS05045at 961.386 kb on + strand, within MMP_RS05045at 961.392 kb on + strand, within MMP_RS05045at 961.460 kb on + strandat 961.465 kb on - strandat 961.508 kb on - strandat 961.542 kb on - strandat 961.543 kb on + strandat 961.543 kb on + strandat 961.543 kb on + strandat 961.550 kb on - strandat 961.573 kb on + strandat 961.573 kb on + strandat 961.573 kb on + strandat 961.581 kb on - strandat 961.582 kb on + strandat 961.584 kb on + strandat 961.607 kb on - strandat 961.636 kb on - strand, within MMP_RS05050at 961.637 kb on + strand, within MMP_RS05050at 961.677 kb on - strand, within MMP_RS05050at 961.699 kb on - strand, within MMP_RS05050at 961.702 kb on + strand, within MMP_RS05050at 961.721 kb on + strand, within MMP_RS05050at 961.724 kb on - strand, within MMP_RS05050at 961.724 kb on - strand, within MMP_RS05050at 961.725 kb on + strand, within MMP_RS05050at 961.725 kb on + strand, within MMP_RS05050at 961.725 kb on + strand, within MMP_RS05050at 961.731 kb on + strand, within MMP_RS05050at 961.766 kb on + strand, within MMP_RS05050at 961.787 kb on + strand, within MMP_RS05050at 961.892 kb on + strand, within MMP_RS05050at 961.988 kb on - strand, within MMP_RS05050at 962.159 kb on - strand, within MMP_RS05050at 962.379 kb on - strandat 962.395 kb on + strandat 962.395 kb on + strandat 962.452 kb on + strandat 962.460 kb on + strandat 962.463 kb on + strandat 962.467 kb on + strandat 962.487 kb on - strandat 962.488 kb on + strandat 962.488 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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959,911 - +1.1
959,925 + +1.6
959,935 - -1.1
959,939 + +1.7
959,952 - -1.0
959,952 - +0.9
959,952 - -2.6
959,952 - -2.5
959,953 + -3.7
959,953 + +1.0
959,953 + -1.2
959,953 + -1.8
959,953 + -0.6
959,954 - -0.8
959,956 - +2.0
959,956 - -0.6
959,957 + -0.7
959,957 + -1.5
959,997 - -3.6
959,997 - +1.8
959,998 + +0.2
959,998 + +1.4
959,998 + -2.8
960,030 - -0.6
960,030 - -0.7
960,035 + +0.1
960,048 + +0.4
960,107 + MMP_RS05040 0.14 -0.7
960,107 + MMP_RS05040 0.14 +1.6
960,139 + MMP_RS05040 0.18 +1.5
960,174 - MMP_RS05040 0.22 -0.3
960,175 + MMP_RS05040 0.22 +2.1
960,175 + MMP_RS05040 0.22 -2.1
960,175 + MMP_RS05040 0.22 -3.7
960,208 - MMP_RS05040 0.26 -2.5
960,208 - MMP_RS05040 0.26 +1.0
960,209 + MMP_RS05040 0.26 -1.0
960,210 - MMP_RS05040 0.26 +0.8
960,210 - MMP_RS05040 0.26 -1.1
960,239 - MMP_RS05040 0.29 +1.0
960,246 - MMP_RS05040 0.30 -1.9
960,246 - MMP_RS05040 0.30 -1.6
960,267 + MMP_RS05040 0.33 -0.3
960,294 + MMP_RS05040 0.36 -0.7
960,473 + MMP_RS05040 0.57 -1.4
960,512 - MMP_RS05040 0.61 +1.1
960,512 - MMP_RS05040 0.61 -0.8
960,557 + MMP_RS05040 0.67 +1.0
960,558 - MMP_RS05040 0.67 +1.1
960,571 + MMP_RS05040 0.68 -2.2
960,571 + MMP_RS05040 0.68 +1.3
960,667 + MMP_RS05040 0.79 +0.8
960,667 + MMP_RS05040 0.79 +0.9
960,697 + MMP_RS05040 0.83 +0.4
960,743 - MMP_RS05040 0.88 +1.8
960,743 - MMP_RS05040 0.88 -1.1
960,744 + MMP_RS05040 0.88 +1.7
960,769 - +1.0
960,773 - +1.4
960,774 + +1.2
960,819 - +1.0
960,931 + MMP_RS05045 0.15 -3.5
960,934 - MMP_RS05045 0.16 +1.4
960,935 + MMP_RS05045 0.16 -2.4
960,935 + MMP_RS05045 0.16 -3.1
960,935 + MMP_RS05045 0.16 -0.3
960,956 - MMP_RS05045 0.19 +1.2
960,963 + MMP_RS05045 0.20 +1.2
960,986 - MMP_RS05045 0.24 +0.4
960,986 - MMP_RS05045 0.24 -1.9
960,986 - MMP_RS05045 0.24 +1.3
960,986 - MMP_RS05045 0.24 -0.2
960,986 - MMP_RS05045 0.24 -3.0
960,987 + MMP_RS05045 0.24 -0.2
960,987 + MMP_RS05045 0.24 +1.9
960,987 + MMP_RS05045 0.24 +0.8
960,987 + MMP_RS05045 0.24 +2.2
960,987 + MMP_RS05045 0.24 +1.0
960,987 + MMP_RS05045 0.24 +1.0
960,987 + MMP_RS05045 0.24 +0.4
960,987 + MMP_RS05045 0.24 +0.3
960,987 + MMP_RS05045 0.24 +0.2
960,989 + MMP_RS05045 0.24 +0.3
960,989 + MMP_RS05045 0.24 -2.0
960,999 - MMP_RS05045 0.26 +1.5
961,002 - MMP_RS05045 0.26 +0.9
961,003 + MMP_RS05045 0.26 +1.4
961,146 + MMP_RS05045 0.48 -1.6
961,181 + MMP_RS05045 0.53 +0.5
961,185 + MMP_RS05045 0.54 -1.4
961,203 - MMP_RS05045 0.57 -0.4
961,217 - MMP_RS05045 0.59 -0.5
961,262 + MMP_RS05045 0.65 +1.0
961,325 - MMP_RS05045 0.75 +0.3
961,326 + MMP_RS05045 0.75 +1.3
961,365 - MMP_RS05045 0.81 -0.1
961,381 - MMP_RS05045 0.83 +1.3
961,382 + MMP_RS05045 0.84 +0.7
961,382 + MMP_RS05045 0.84 -3.4
961,382 + MMP_RS05045 0.84 -0.7
961,386 + MMP_RS05045 0.84 +1.8
961,392 + MMP_RS05045 0.85 -0.1
961,460 + +1.1
961,465 - +0.2
961,508 - -2.5
961,542 - +0.4
961,543 + -1.0
961,543 + +1.0
961,543 + +1.3
961,550 - -1.9
961,573 + +0.8
961,573 + +1.9
961,573 + -1.1
961,581 - -1.6
961,582 + +1.5
961,584 + -3.3
961,607 - +0.5
961,636 - MMP_RS05050 0.11 +1.0
961,637 + MMP_RS05050 0.11 +0.3
961,677 - MMP_RS05050 0.16 +1.3
961,699 - MMP_RS05050 0.19 +1.1
961,702 + MMP_RS05050 0.19 -4.6
961,721 + MMP_RS05050 0.21 +0.8
961,724 - MMP_RS05050 0.21 +1.7
961,724 - MMP_RS05050 0.21 -0.7
961,725 + MMP_RS05050 0.22 +0.5
961,725 + MMP_RS05050 0.22 +1.8
961,725 + MMP_RS05050 0.22 -4.2
961,731 + MMP_RS05050 0.22 +0.8
961,766 + MMP_RS05050 0.26 -0.6
961,787 + MMP_RS05050 0.29 +1.6
961,892 + MMP_RS05050 0.41 +0.5
961,988 - MMP_RS05050 0.52 -1.9
962,159 - MMP_RS05050 0.73 -1.4
962,379 - -0.5
962,395 + -1.3
962,395 + +1.4
962,452 + +0.2
962,460 + +0.0
962,463 + +0.9
962,467 + +1.1
962,487 - +0.1
962,488 + +1.5
962,488 + +0.3

Or see this region's nucleotide sequence