Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04985

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04980 and MMP_RS04985 are separated by 35 nucleotidesMMP_RS04985 and MMP_RS04990 overlap by 4 nucleotidesMMP_RS04990 and MMP_RS04995 are separated by 124 nucleotides MMP_RS04980: MMP_RS04980 - DUF2193 domain-containing protein, at 949,611 to 951,110 _RS04980 MMP_RS04985: MMP_RS04985 - DUF2180 family protein, at 951,146 to 951,361 _RS04985 MMP_RS04990: MMP_RS04990 - aquaporin family protein, at 951,358 to 952,077 _RS04990 MMP_RS04995: MMP_RS04995 - hypothetical protein, at 952,202 to 952,459 _RS04995 Position (kb) 951 952Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 950.158 kb on + strand, within MMP_RS04980at 950.239 kb on - strand, within MMP_RS04980at 950.315 kb on - strand, within MMP_RS04980at 950.323 kb on + strand, within MMP_RS04980at 950.323 kb on + strand, within MMP_RS04980at 950.359 kb on - strand, within MMP_RS04980at 950.360 kb on + strand, within MMP_RS04980at 950.401 kb on - strand, within MMP_RS04980at 950.406 kb on + strand, within MMP_RS04980at 950.416 kb on + strand, within MMP_RS04980at 950.416 kb on + strand, within MMP_RS04980at 950.416 kb on + strand, within MMP_RS04980at 950.416 kb on + strand, within MMP_RS04980at 950.522 kb on - strand, within MMP_RS04980at 950.523 kb on + strand, within MMP_RS04980at 950.566 kb on - strand, within MMP_RS04980at 950.567 kb on + strand, within MMP_RS04980at 950.567 kb on + strand, within MMP_RS04980at 950.609 kb on - strand, within MMP_RS04980at 950.609 kb on - strand, within MMP_RS04980at 950.648 kb on + strand, within MMP_RS04980at 950.677 kb on + strand, within MMP_RS04980at 950.681 kb on + strand, within MMP_RS04980at 950.746 kb on + strand, within MMP_RS04980at 950.746 kb on + strand, within MMP_RS04980at 950.747 kb on - strand, within MMP_RS04980at 950.761 kb on - strand, within MMP_RS04980at 950.865 kb on + strand, within MMP_RS04980at 950.884 kb on + strand, within MMP_RS04980at 951.085 kb on + strandat 951.107 kb on + strandat 951.108 kb on - strandat 951.113 kb on - strandat 951.114 kb on + strandat 951.120 kb on + strandat 951.156 kb on + strandat 951.238 kb on + strand, within MMP_RS04985at 951.238 kb on + strand, within MMP_RS04985at 951.240 kb on - strand, within MMP_RS04985at 951.241 kb on + strand, within MMP_RS04985at 951.241 kb on + strand, within MMP_RS04985at 951.335 kb on + strand, within MMP_RS04985at 951.565 kb on + strand, within MMP_RS04990at 951.565 kb on + strand, within MMP_RS04990at 951.636 kb on - strand, within MMP_RS04990at 951.644 kb on - strand, within MMP_RS04990at 951.647 kb on + strand, within MMP_RS04990at 951.648 kb on - strand, within MMP_RS04990at 951.649 kb on + strand, within MMP_RS04990at 951.649 kb on + strand, within MMP_RS04990at 951.762 kb on + strand, within MMP_RS04990at 951.973 kb on + strand, within MMP_RS04990at 951.995 kb on + strand, within MMP_RS04990at 951.998 kb on + strand, within MMP_RS04990at 952.007 kb on - strandat 952.009 kb on - strandat 952.009 kb on - strandat 952.009 kb on - strandat 952.009 kb on - strandat 952.010 kb on + strandat 952.010 kb on + strandat 952.010 kb on + strandat 952.011 kb on - strandat 952.011 kb on - strandat 952.012 kb on + strandat 952.012 kb on + strandat 952.012 kb on + strandat 952.012 kb on + strandat 952.037 kb on - strandat 952.037 kb on - strandat 952.037 kb on - strandat 952.037 kb on - strandat 952.038 kb on + strandat 952.038 kb on + strandat 952.054 kb on - strandat 952.054 kb on - strandat 952.054 kb on - strandat 952.075 kb on - strandat 952.075 kb on - strandat 952.128 kb on + strandat 952.176 kb on + strandat 952.176 kb on + strandat 952.180 kb on + strandat 952.199 kb on + strandat 952.318 kb on - strand, within MMP_RS04995at 952.319 kb on + strand, within MMP_RS04995

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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950,158 + MMP_RS04980 0.36 -0.5
950,239 - MMP_RS04980 0.42 +0.5
950,315 - MMP_RS04980 0.47 -0.2
950,323 + MMP_RS04980 0.47 -3.9
950,323 + MMP_RS04980 0.47 +0.1
950,359 - MMP_RS04980 0.50 +0.5
950,360 + MMP_RS04980 0.50 +1.3
950,401 - MMP_RS04980 0.53 -1.3
950,406 + MMP_RS04980 0.53 +0.7
950,416 + MMP_RS04980 0.54 +0.4
950,416 + MMP_RS04980 0.54 +1.6
950,416 + MMP_RS04980 0.54 -2.7
950,416 + MMP_RS04980 0.54 +0.6
950,522 - MMP_RS04980 0.61 -0.2
950,523 + MMP_RS04980 0.61 -0.3
950,566 - MMP_RS04980 0.64 +0.2
950,567 + MMP_RS04980 0.64 -2.9
950,567 + MMP_RS04980 0.64 -0.1
950,609 - MMP_RS04980 0.67 -1.1
950,609 - MMP_RS04980 0.67 +0.8
950,648 + MMP_RS04980 0.69 -0.1
950,677 + MMP_RS04980 0.71 +1.3
950,681 + MMP_RS04980 0.71 -3.5
950,746 + MMP_RS04980 0.76 +0.7
950,746 + MMP_RS04980 0.76 -3.9
950,747 - MMP_RS04980 0.76 +0.7
950,761 - MMP_RS04980 0.77 +0.2
950,865 + MMP_RS04980 0.84 -1.5
950,884 + MMP_RS04980 0.85 -0.3
951,085 + -1.3
951,107 + -0.4
951,108 - +0.1
951,113 - -3.5
951,114 + -1.4
951,120 + -2.2
951,156 + -0.2
951,238 + MMP_RS04985 0.43 +0.0
951,238 + MMP_RS04985 0.43 -1.0
951,240 - MMP_RS04985 0.44 -1.4
951,241 + MMP_RS04985 0.44 -1.3
951,241 + MMP_RS04985 0.44 +0.5
951,335 + MMP_RS04985 0.88 -1.0
951,565 + MMP_RS04990 0.29 +0.7
951,565 + MMP_RS04990 0.29 +0.7
951,636 - MMP_RS04990 0.39 -0.8
951,644 - MMP_RS04990 0.40 -0.0
951,647 + MMP_RS04990 0.40 +1.5
951,648 - MMP_RS04990 0.40 -1.5
951,649 + MMP_RS04990 0.40 +1.3
951,649 + MMP_RS04990 0.40 -3.2
951,762 + MMP_RS04990 0.56 +0.7
951,973 + MMP_RS04990 0.85 +0.6
951,995 + MMP_RS04990 0.88 -0.7
951,998 + MMP_RS04990 0.89 +0.0
952,007 - -1.2
952,009 - +0.1
952,009 - +2.1
952,009 - +1.6
952,009 - +0.2
952,010 + +0.5
952,010 + +0.7
952,010 + +1.9
952,011 - -0.5
952,011 - +0.1
952,012 + +0.7
952,012 + -1.7
952,012 + +0.7
952,012 + -0.0
952,037 - -2.5
952,037 - +0.2
952,037 - +0.3
952,037 - +1.5
952,038 + +0.3
952,038 + +0.9
952,054 - -2.3
952,054 - -1.5
952,054 - -2.5
952,075 - -1.4
952,075 - -1.1
952,128 + +1.5
952,176 + -0.0
952,176 + -3.5
952,180 + +1.0
952,199 + -0.3
952,318 - MMP_RS04995 0.45 -1.9
952,319 + MMP_RS04995 0.45 +0.7

Or see this region's nucleotide sequence